Literature DB >> 27704861

Probing Residue-Specific Water-Protein Interactions in Oriented Lipid Membranes via Solid-State NMR Spectroscopy.

Alysha Dicke1, T Gopinath1, Yingjie Wang1, Gianluigi Veglia1.   

Abstract

Water plays a central role in membrane protein folding and function. It not only catalyzes lipid membrane self-assembly but also affects the structural integrity and conformational dynamics of membrane proteins. Magic angle spinning (MAS) solid-state NMR (ssNMR) is the technique of choice for measuring water accessibility of membrane proteins, providing a measure for membrane protein topology and insertion within lipid bilayers. However, the sensitivity and resolution of membrane protein samples for MAS experiments are often dictated by hydration levels, which affect the structural dynamics of membrane proteins. Oriented-sample ssNMR (OS-ssNMR) is a complementary technique to determine both structure and topology of membrane proteins in liquid crystalline bilayers. Recent advancements in OS-ssNMR involve the use of oriented bicellar phases that have improved both sensitivity and resolution. Importantly, for bicelle formation and orientation, lipid bilayers must be well organized and hydrated, resulting in the protein's topology being similar to that found in native membranes. Under these conditions, the NMR resonances become relatively narrow, enabling a better separation of 1H-15N dipolar couplings and anisotropic 15N chemical shifts with separated local field (SLF) experiments. Here, we report a residue-specific water accessibility experiment for a small membrane protein, sarcolipin (SLN), embedded in oriented lipid bicelles as probed by new water-edited SLF (WE-SLF) experiments. We show that SLN's residues belonging to the juxtamembrane region are more exposed to the water-lipid interface than the corresponding membrane-embedded residues. The information that can be obtained from the WE-SLF experiments can be interpreted using a simple theoretical model based on spin-diffusion theory and offers a complete characterization of membrane proteins in realistic membrane bilayer systems.

Entities:  

Year:  2016        PMID: 27704861      PMCID: PMC5441980          DOI: 10.1021/acs.jpcb.6b08282

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  56 in total

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Authors:  F M Marassi; S J Opella
Journal:  J Magn Reson       Date:  2000-05       Impact factor: 2.229

Review 2.  Protein hydration in aqueous solution.

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3.  Overexpression, purification, and characterization of recombinant Ca-ATPase regulators for high-resolution solution and solid-state NMR studies.

Authors:  Bethany Buck; Jamillah Zamoon; Tara L Kirby; Tara M DeSilva; Christine Karim; David Thomas; Gianluigi Veglia
Journal:  Protein Expr Purif       Date:  2003-08       Impact factor: 1.650

Review 4.  Disease-related misassembly of membrane proteins.

Authors:  Charles R Sanders; Jeffrey K Myers
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

5.  An improved broadband decoupling sequence for liquid crystals and solids.

Authors:  B M Fung; A K Khitrin; K Ermolaev
Journal:  J Magn Reson       Date:  2000-01       Impact factor: 2.229

6.  Deuterium/hydrogen exchange factors measured by solution nuclear magnetic resonance spectroscopy as indicators of the structure and topology of membrane proteins.

Authors:  Gianluigi Veglia; Ana Carolina Zeri; Che Ma; Stanley J Opella
Journal:  Biophys J       Date:  2002-04       Impact factor: 4.033

7.  Water: foldase activity in catalyzing polypeptide conformational rearrangements.

Authors:  F Xu; T A Cross
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

8.  Structure and orientation of sarcolipin in lipid environments.

Authors:  Alessandro Mascioni; Christine Karim; George Barany; David D Thomas; Gianluigi Veglia
Journal:  Biochemistry       Date:  2002-01-15       Impact factor: 3.162

9.  Membrane protein topology probed by (1)H spin diffusion from lipids using solid-state NMR spectroscopy.

Authors:  Daniel Huster; Xiaolan Yao; Mei Hong
Journal:  J Am Chem Soc       Date:  2002-02-06       Impact factor: 15.419

Review 10.  Hydrogen exchange methods to study protein folding.

Authors:  Mallela M G Krishna; Linh Hoang; Yan Lin; S Walter Englander
Journal:  Methods       Date:  2004-09       Impact factor: 3.608

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  2 in total

1.  Application of paramagnetic relaxation enhancements to accelerate the acquisition of 2D and 3D solid-state NMR spectra of oriented membrane proteins.

Authors:  Songlin Wang; T Gopinath; Gianluigi Veglia
Journal:  Methods       Date:  2017-12-22       Impact factor: 3.608

2.  Side Chain Hydrogen-Bonding Interactions within Amyloid-like Fibrils Formed by the Low-Complexity Domain of FUS: Evidence from Solid State Nuclear Magnetic Resonance Spectroscopy.

Authors:  Dylan T Murray; Robert Tycko
Journal:  Biochemistry       Date:  2020-01-10       Impact factor: 3.162

  2 in total

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