Literature DB >> 24078042

Independent valine and leucine isotope labeling in Escherichia coli protein overexpression systems.

Roman J Lichtenecker, Katharina Weinhäupl, Lukas Reuther, Julia Schörghuber, Walther Schmid, Robert Konrat.   

Abstract

The addition of labeled α-ketoisovalerate to the growth medium of a protein-expressing host organism has evolved into a versatile tool to achieve concomitant incorporation of specific isotopes into valine- and leucine- residues. The resulting target proteins represent excellent probes for protein NMR analysis. However, as the sidechain resonances of these residues emerge in a narrow spectral range, signal overlap represents a severe limitation in the case of high-molecular-weight NMR probes. We present a protocol to eliminate leucine labeling by supplying the medium with unlabeled α-ketoisocaproate. The resulting spectra of a model protein exclusively feature valine signals of increased intensity, confirming the method to be a first example of independent valine and leucine labeling employing α-ketoacid precursor compounds.

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Year:  2013        PMID: 24078042     DOI: 10.1007/s10858-013-9786-y

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  19 in total

Review 1.  Methyl groups as probes of structure and dynamics in NMR studies of high-molecular-weight proteins.

Authors:  Vitali Tugarinov; Lewis E Kay
Journal:  Chembiochem       Date:  2005-09       Impact factor: 3.164

2.  Structural basis for signal-sequence recognition by the translocase motor SecA as determined by NMR.

Authors:  Ioannis Gelis; Alexandre M J J Bonvin; Dimitra Keramisanou; Marina Koukaki; Giorgos Gouridis; Spyridoula Karamanou; Anastassios Economou; Charalampos G Kalodimos
Journal:  Cell       Date:  2007-11-16       Impact factor: 41.582

3.  Solution NMR of supramolecular complexes: providing new insights into function.

Authors:  Remco Sprangers; Algirdas Velyvis; Lewis E Kay
Journal:  Nat Methods       Date:  2007-09       Impact factor: 28.547

4.  Direct methods and residue type specific isotope labeling in NMR structure determination and model-driven sequential assignment.

Authors:  Andreas Schedlbauer; Renate Auer; Karin Ledolter; Martin Tollinger; Karin Kloiber; Roman Lichtenecker; Simon Ruedisser; Ulrich Hommel; Walther Schmid; Robert Konrat; Georg Kontaxis
Journal:  J Biomol NMR       Date:  2008-09-02       Impact factor: 2.835

5.  Selective isotope labelling of leucine residues by using α-ketoacid precursor compounds.

Authors:  Roman J Lichtenecker; Nicolas Coudevylle; Robert Konrat; Walther Schmid
Journal:  Chembiochem       Date:  2013-04-05       Impact factor: 3.164

6.  Quantitative 13C and 2H NMR relaxation studies of the 723-residue enzyme malate synthase G reveal a dynamic binding interface.

Authors:  Vitali Tugarinov; Lewis E Kay
Journal:  Biochemistry       Date:  2005-12-13       Impact factor: 3.162

7.  Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy.

Authors:  Vitali Tugarinov; Voula Kanelis; Lewis E Kay
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

8.  A simple strategy for ¹³C, ¹H labeling at the Ile-γ2 methyl position in highly deuterated proteins.

Authors:  Amy M Ruschak; Algirdas Velyvis; Lewis E Kay
Journal:  J Biomol NMR       Date:  2010-10-14       Impact factor: 2.835

9.  Simplification of protein NOESY spectra using bioorganic precursor synthesis and NMR spectral editing.

Authors:  Roman Lichtenecker; Martin L Ludwiczek; Walther Schmid; Robert Konrat
Journal:  J Am Chem Soc       Date:  2004-05-05       Impact factor: 15.419

10.  A sensitive and robust method for obtaining intermolecular NOEs between side chains in large protein complexes.

Authors:  John D Gross; Vladimir M Gelev; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2003-03       Impact factor: 2.835

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  14 in total

1.  Highly efficient residue-selective labeling with isotope-labeled Ile, Leu, and Val using a new auxotrophic E. coli strain.

Authors:  Yohei Miyanoiri; Yojiro Ishida; Mitsuhiro Takeda; Tsutomu Terauchi; Masayori Inouye; Masatsune Kainosho
Journal:  J Biomol NMR       Date:  2016-06-06       Impact factor: 2.835

2.  Scrambling free combinatorial labeling of alanine-β, isoleucine-δ1, leucine-proS and valine-proS methyl groups for the detection of long range NOEs.

Authors:  Rime Kerfah; Michael J Plevin; Ombeline Pessey; Olivier Hamelin; Pierre Gans; Jerome Boisbouvier
Journal:  J Biomol NMR       Date:  2014-11-28       Impact factor: 2.835

3.  Measuring the signs of the methyl 1H chemical shift differences between major and 'invisible' minor protein conformational states using methyl 1H multi-quantum spectroscopy.

Authors:  Anusha B Gopalan; Pramodh Vallurupalli
Journal:  J Biomol NMR       Date:  2018-03-21       Impact factor: 2.835

4.  Measurement of residual dipolar couplings in methyl groups via carbon detection.

Authors:  Robert V Williams; Jeong-Yeh Yang; Kelley W Moremen; I Jonathan Amster; James H Prestegard
Journal:  J Biomol NMR       Date:  2019-04-30       Impact factor: 2.835

5.  Automatic methyl assignment in large proteins by the MAGIC algorithm.

Authors:  Yoan R Monneau; Paolo Rossi; Anusarka Bhaumik; Chengdong Huang; Yajun Jiang; Tamjeed Saleh; Tao Xie; Qiong Xing; Charalampos G Kalodimos
Journal:  J Biomol NMR       Date:  2017-11-02       Impact factor: 2.835

6.  2-Propylphenol Allosterically Modulates COQ8A to Enhance ATPase Activity.

Authors:  Nathan H Murray; Adam Lewis; Juan P Rincon Pabon; Michael L Gross; Katherine Henzler-Wildman; David J Pagliarini
Journal:  ACS Chem Biol       Date:  2022-07-29       Impact factor: 4.634

7.  Mutation of Conserved Mre11 Residues Alter Protein Dynamics to Separate Nuclease Functions.

Authors:  Samiur Rahman; Mahtab Beikzadeh; Marella D Canny; Navneet Kaur; Michael P Latham
Journal:  J Mol Biol       Date:  2020-04-01       Impact factor: 5.469

Review 8.  Measuring Entropy in Molecular Recognition by Proteins.

Authors:  A Joshua Wand; Kim A Sharp
Journal:  Annu Rev Biophys       Date:  2018-01-18       Impact factor: 12.981

9.  Simultaneous measurement of 1HC/N-R2's for rapid acquisition of backbone and sidechain paramagnetic relaxation enhancements (PREs) in proteins.

Authors:  C Ashley Barnes; Mary R Starich; Nico Tjandra; Pushpa Mishra
Journal:  J Biomol NMR       Date:  2021-02-24       Impact factor: 2.835

Review 10.  The dynamic nature of the Mre11-Rad50 DNA break repair complex.

Authors:  Mahtab Beikzadeh; Michael P Latham
Journal:  Prog Biophys Mol Biol       Date:  2020-10-24       Impact factor: 4.799

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