Literature DB >> 35904798

2-Propylphenol Allosterically Modulates COQ8A to Enhance ATPase Activity.

Nathan H Murray1,2,3, Adam Lewis1, Juan P Rincon Pabon4, Michael L Gross4, Katherine Henzler-Wildman1, David J Pagliarini1,2,3,5,6.   

Abstract

COQ8A is an atypical kinase-like protein that aids the biosynthesis of coenzyme Q, an essential cellular cofactor and antioxidant. COQ8A's mode of action remains unclear, in part due to the lack of small molecule tools to probe its function. Here, we blend NMR and hydrogen-deuterium exchange mass spectrometry to help determine how a small CoQ precursor mimetic, 2-propylphenol, modulates COQ8A activity. We identify a likely 2-propylphenol binding site and reveal that this compound modulates a conserved COQ8A domain to increase nucleotide affinity and ATPase activity. Our findings promise to aid further investigations into COQ8A's precise enzymatic function and the design of compounds capable of boosting endogenous CoQ production for therapeutic gain.

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Year:  2022        PMID: 35904798      PMCID: PMC9586199          DOI: 10.1021/acschembio.2c00434

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   4.634


  37 in total

1.  Protein A does not induce allosteric structural changes in an IgG1 antibody during binding.

Authors:  Juan P Rincon Pabon; Brent A Kochert; Yan-Hui Liu; Douglas D Richardson; David D Weis
Journal:  J Pharm Sci       Date:  2021-02-25       Impact factor: 3.534

Review 2.  Protein-Small Molecule Interactions by WaterLOGSY.

Authors:  Renjie Huang; Ivanhoe K H Leung
Journal:  Methods Enzymol       Date:  2018-09-20       Impact factor: 1.600

3.  Coenzyme Q supplementation or over-expression of the yeast Coq8 putative kinase stabilizes multi-subunit Coq polypeptide complexes in yeast coq null mutants.

Authors:  Cuiwen H He; Letian X Xie; Christopher M Allan; Uyenphuong C Tran; Catherine F Clarke
Journal:  Biochim Biophys Acta       Date:  2014-01-07

4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy.

Authors:  Vitali Tugarinov; Voula Kanelis; Lewis E Kay
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

6.  Sparse multidimensional iterative lineshape-enhanced (SMILE) reconstruction of both non-uniformly sampled and conventional NMR data.

Authors:  Jinfa Ying; Frank Delaglio; Dennis A Torchia; Ad Bax
Journal:  J Biomol NMR       Date:  2016-11-19       Impact factor: 2.835

7.  Reliable Identification of Significant Differences in Differential Hydrogen Exchange-Mass Spectrometry Measurements Using a Hybrid Significance Testing Approach.

Authors:  Tyler S Hageman; David D Weis
Journal:  Anal Chem       Date:  2019-06-11       Impact factor: 6.986

8.  Mitochondrial ADCK3 employs an atypical protein kinase-like fold to enable coenzyme Q biosynthesis.

Authors:  Jonathan A Stefely; Andrew G Reidenbach; Arne Ulbrich; Krishnadev Oruganty; Brendan J Floyd; Adam Jochem; Jaclyn M Saunders; Isabel E Johnson; Catherine E Minogue; Russell L Wrobel; Grant E Barber; David Lee; Sheng Li; Natarajan Kannan; Joshua J Coon; Craig A Bingman; David J Pagliarini
Journal:  Mol Cell       Date:  2014-12-11       Impact factor: 17.970

9.  Nmrglue: an open source Python package for the analysis of multidimensional NMR data.

Authors:  Jonathan J Helmus; Christopher P Jaroniec
Journal:  J Biomol NMR       Date:  2013-03-02       Impact factor: 2.835

10.  ADCK3/COQ8A: the choice target of the UbiB protein kinase-like family.

Authors:  Christopher R M Asquith; Nathan H Murray; David J Pagliarini
Journal:  Nat Rev Drug Discov       Date:  2019-10       Impact factor: 84.694

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