Literature DB >> 33625630

Simultaneous measurement of 1HC/N-R2's for rapid acquisition of backbone and sidechain paramagnetic relaxation enhancements (PREs) in proteins.

C Ashley Barnes1, Mary R Starich1, Nico Tjandra1, Pushpa Mishra2.   

Abstract

Paramagnetic relaxation enhancements (PREs) are routinely used to provide long-range distance restraints for the determination of protein structures, to resolve protein dynamics, ligand-protein binding sites, and lowly populated species, using Nuclear Magnetic Resonance Spectroscopy (NMR). Here, we propose a simultaneous 1H-15 N, 1H-13C SESAME based pulse scheme for the rapid acquisition of 1HC/N-R2 relaxation rates for the determination of backbone and sidechain PREs of proteins. The 1HN-R2 rates from the traditional and our approach on Ubiquitin (UBQ) are well correlated (R2 = 0.99), revealing their potential to be used quantitatively. Comparison of the S57C UBQ calculated and experimental PREs provided backbone and side chain Q factors of 0.23 and 0.24, respectively, well-fitted to the UBQ NMR structure, showing that our approach can be used to acquire accurate PRE rates from the functionally important sites of proteins but in at least half the time as traditional methods.

Entities:  

Keywords:  HSQC; NMR; PRE; Ubiquitin

Mesh:

Substances:

Year:  2021        PMID: 33625630      PMCID: PMC8096723          DOI: 10.1007/s10858-021-00359-9

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  49 in total

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3.  Structural biology: Proteins in dynamic equilibrium.

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4.  Practical aspects of (1)H transverse paramagnetic relaxation enhancement measurements on macromolecules.

Authors:  Junji Iwahara; Chun Tang; G Marius Clore
Journal:  J Magn Reson       Date:  2006-11-02       Impact factor: 2.229

Review 5.  Elucidating transient macromolecular interactions using paramagnetic relaxation enhancement.

Authors:  G Marius Clore; Chun Tang; Junji Iwahara
Journal:  Curr Opin Struct Biol       Date:  2007-10-29       Impact factor: 6.809

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

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Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  Probing slow time scale dynamics at methyl-containing side chains in proteins by relaxation dispersion NMR measurements: application to methionine residues in a cavity mutant of T4 lysozyme.

Authors:  N R Skrynnikov; F A Mulder; B Hon; F W Dahlquist; L E Kay
Journal:  J Am Chem Soc       Date:  2001-05-16       Impact factor: 15.419

8.  Side chain dynamics in unfolded protein states: an NMR based 2H spin relaxation study of delta131delta.

Authors:  Wing-Yiu Choy; David Shortle; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2003-02-19       Impact factor: 15.419

9.  Protein global fold determination using site-directed spin and isotope labeling.

Authors:  V Gaponenko; J W Howarth; L Columbus; G Gasmi-Seabrook; J Yuan; W L Hubbell; P R Rosevear
Journal:  Protein Sci       Date:  2000-02       Impact factor: 6.725

Review 10.  Methyl-Based NMR Spectroscopy Methods for Uncovering Structural Dynamics in Large Proteins and Protein Complexes.

Authors:  Zachary K Boswell; Michael P Latham
Journal:  Biochemistry       Date:  2018-10-26       Impact factor: 3.162

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