Literature DB >> 20949307

A simple strategy for ¹³C, ¹H labeling at the Ile-γ2 methyl position in highly deuterated proteins.

Amy M Ruschak1, Algirdas Velyvis, Lewis E Kay.   

Abstract

A straightforward approach for the production of highly deuterated proteins labeled with ¹³C and ¹H at Ile-γ2 methyl positions is described. The utility of the methodology is illustrated with an application involving the half proteasome (360 kDa). High quality 2D Ile ¹³C(γ)²,¹H(γ)² HMQC data sets, exploiting the methyl-TROSY principle, are recorded with excellent sensitivity and resolution, that compare favorably with Ile ¹³C(δ)¹,¹H(δ)¹ spectra. This labeling scheme adds to a growing list of different approaches that are significantly impacting the utility of solution NMR spectroscopy in studies of supra-molecular systems.

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Year:  2010        PMID: 20949307     DOI: 10.1007/s10858-010-9449-1

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  23 in total

1.  An isotope labeling strategy for methyl TROSY spectroscopy.

Authors:  Vitali Tugarinov; Lewis E Kay
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

2.  Dynamic regulation of archaeal proteasome gate opening as studied by TROSY NMR.

Authors:  Tomasz L Religa; Remco Sprangers; Lewis E Kay
Journal:  Science       Date:  2010-04-02       Impact factor: 47.728

Review 3.  Methyl groups as probes of structure and dynamics in NMR studies of high-molecular-weight proteins.

Authors:  Vitali Tugarinov; Lewis E Kay
Journal:  Chembiochem       Date:  2005-09       Impact factor: 3.164

4.  The contact interface of a 120 kD CheA-CheW complex by methyl TROSY interaction spectroscopy.

Authors:  Damon J Hamel; Frederick W Dahlquist
Journal:  J Am Chem Soc       Date:  2005-07-13       Impact factor: 15.419

5.  High-accuracy distance measurement between remote methyls in specifically protonated proteins.

Authors:  Remy Sounier; Laurence Blanchard; Zhengrong Wu; Jérôme Boisbouvier
Journal:  J Am Chem Soc       Date:  2007-01-24       Impact factor: 15.419

6.  Synthesis of a 13C-methyl-group-labeled methionine precursor as a useful tool for simplifying protein structural analysis by NMR spectroscopy.

Authors:  Michael Fischer; Karin Kloiber; Johannes Häusler; Karin Ledolter; Robert Konrat; Walther Schmid
Journal:  Chembiochem       Date:  2007-04-16       Impact factor: 3.164

7.  Structural basis for signal-sequence recognition by the translocase motor SecA as determined by NMR.

Authors:  Ioannis Gelis; Alexandre M J J Bonvin; Dimitra Keramisanou; Marina Koukaki; Giorgos Gouridis; Spyridoula Karamanou; Anastassios Economou; Charalampos G Kalodimos
Journal:  Cell       Date:  2007-11-16       Impact factor: 41.582

8.  Fast two-dimensional NMR spectroscopy of high molecular weight protein assemblies.

Authors:  Carlos Amero; Paul Schanda; M Asunción Durá; Isabel Ayala; Dominique Marion; Bruno Franzetti; Bernhard Brutscher; Jérôme Boisbouvier
Journal:  J Am Chem Soc       Date:  2009-03-18       Impact factor: 15.419

9.  Correlation between dynamics and high affinity binding in an SH2 domain interaction.

Authors:  L E Kay; D R Muhandiram; N A Farrow; Y Aubin; J D Forman-Kay
Journal:  Biochemistry       Date:  1996-01-16       Impact factor: 3.162

10.  Automated assignment in selectively methyl-labeled proteins.

Authors:  Yingqi Xu; Minhao Liu; Peter J Simpson; Rivka Isaacson; Ernesto Cota; Jan Marchant; Daiwen Yang; Xiaodong Zhang; Paul Freemont; Stephen Matthews
Journal:  J Am Chem Soc       Date:  2009-07-15       Impact factor: 15.419

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  23 in total

1.  Estimating side-chain order in methyl-protonated, perdeuterated proteins via multiple-quantum relaxation violated coherence transfer NMR spectroscopy.

Authors:  Hechao Sun; Raquel Godoy-Ruiz; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2012-03       Impact factor: 2.835

2.  Thermal coefficients of the methyl groups within ubiquitin.

Authors:  T Michael Sabo; Davood Bakhtiari; Korvin F A Walter; Robert L McFeeters; Karin Giller; Stefan Becker; Christian Griesinger; Donghan Lee
Journal:  Protein Sci       Date:  2012-03-02       Impact factor: 6.725

3.  A simple biosynthetic method for stereospecific resonance assignment of prochiral methyl groups in proteins.

Authors:  Michael J Plevin; Olivier Hamelin; Jérôme Boisbouvier; Pierre Gans
Journal:  J Biomol NMR       Date:  2011-02-01       Impact factor: 2.835

4.  Independent valine and leucine isotope labeling in Escherichia coli protein overexpression systems.

Authors:  Roman J Lichtenecker; Katharina Weinhäupl; Lukas Reuther; Julia Schörghuber; Walther Schmid; Robert Konrat
Journal:  J Biomol NMR       Date:  2013-11       Impact factor: 2.835

5.  Highly efficient residue-selective labeling with isotope-labeled Ile, Leu, and Val using a new auxotrophic E. coli strain.

Authors:  Yohei Miyanoiri; Yojiro Ishida; Mitsuhiro Takeda; Tsutomu Terauchi; Masayori Inouye; Masatsune Kainosho
Journal:  J Biomol NMR       Date:  2016-06-06       Impact factor: 2.835

6.  A systematic mutagenesis-driven strategy for site-resolved NMR studies of supramolecular assemblies.

Authors:  Carlos Amero; M Asunción Durá; Marjolaine Noirclerc-Savoye; Arnaud Perollier; Benoit Gallet; Michael J Plevin; Thierry Vernet; Bruno Franzetti; Jérôme Boisbouvier
Journal:  J Biomol NMR       Date:  2011-05-29       Impact factor: 2.835

7.  Scrambling free combinatorial labeling of alanine-β, isoleucine-δ1, leucine-proS and valine-proS methyl groups for the detection of long range NOEs.

Authors:  Rime Kerfah; Michael J Plevin; Ombeline Pessey; Olivier Hamelin; Pierre Gans; Jerome Boisbouvier
Journal:  J Biomol NMR       Date:  2014-11-28       Impact factor: 2.835

8.  Specific labeling of threonine methyl groups for NMR studies of protein-nucleic acid complexes.

Authors:  Kaustubh Sinha; Linda Jen-Jacobson; Gordon S Rule
Journal:  Biochemistry       Date:  2011-11-03       Impact factor: 3.162

9.  Conformational heterogeneity in the Hsp70 chaperone-substrate ensemble identified from analysis of NMR-detected titration data.

Authors:  Ashok Sekhar; Jayashree Nagesh; Rina Rosenzweig; Lewis E Kay
Journal:  Protein Sci       Date:  2017-09-18       Impact factor: 6.725

10.  Deuteration and selective labeling of alanine methyl groups of β2-adrenergic receptor expressed in a baculovirus-insect cell expression system.

Authors:  Yutaka Kofuku; Tomoki Yokomizo; Shunsuke Imai; Yutaro Shiraishi; Mei Natsume; Hiroaki Itoh; Masayuki Inoue; Kunio Nakata; Shunsuke Igarashi; Hideyuki Yamaguchi; Toshimi Mizukoshi; Ei-Ichiro Suzuki; Takumi Ueda; Ichio Shimada
Journal:  J Biomol NMR       Date:  2018-03-08       Impact factor: 2.835

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