Literature DB >> 15113192

Simplification of protein NOESY spectra using bioorganic precursor synthesis and NMR spectral editing.

Roman Lichtenecker1, Martin L Ludwiczek, Walther Schmid, Robert Konrat.   

Abstract

A novel method is proposed for the analysis of protein NOEs in solution. In this approach, chemically synthesized precursor compounds for the amino acids valine, leucine, and isoleucine are used for amino acid specific labeling of these hydrophobic residues. The methodology is based on a novel synthetic route to 12C,1H,2H Val, Leu, and Ile side chains selectively labeled with 13CH3 only at the terminal methyl group. In an otherwise 12C,1H labeled protein, discrimination between protons bound to 12C and 13C (or 15N) can be achieved using standard isotope-editing NMR pulse schemes. This strategy significantly relieves problems with spectral overlap through selective observation of interresidue methyl NOEs and will thus be a powerful extension of existing biomolecular NMR methodology.

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Year:  2004        PMID: 15113192     DOI: 10.1021/ja049679n

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  20 in total

1.  A simple biosynthetic method for stereospecific resonance assignment of prochiral methyl groups in proteins.

Authors:  Michael J Plevin; Olivier Hamelin; Jérôme Boisbouvier; Pierre Gans
Journal:  J Biomol NMR       Date:  2011-02-01       Impact factor: 2.835

2.  Generation and relaxation of high rank coherences in AX3 systems in a selectively methionine labelled SH2 domain.

Authors:  Karin Kloiber; Michael Fischer; Karin Ledolter; Michael Nagl; Walther Schmid; Robert Konrat
Journal:  J Biomol NMR       Date:  2007-05-09       Impact factor: 2.835

3.  Independent valine and leucine isotope labeling in Escherichia coli protein overexpression systems.

Authors:  Roman J Lichtenecker; Katharina Weinhäupl; Lukas Reuther; Julia Schörghuber; Walther Schmid; Robert Konrat
Journal:  J Biomol NMR       Date:  2013-11       Impact factor: 2.835

4.  Direct methods and residue type specific isotope labeling in NMR structure determination and model-driven sequential assignment.

Authors:  Andreas Schedlbauer; Renate Auer; Karin Ledolter; Martin Tollinger; Karin Kloiber; Roman Lichtenecker; Simon Ruedisser; Ulrich Hommel; Walther Schmid; Robert Konrat; Georg Kontaxis
Journal:  J Biomol NMR       Date:  2008-09-02       Impact factor: 2.835

Review 5.  Methyl groups as probes of supra-molecular structure, dynamics and function.

Authors:  Amy M Ruschak; Lewis E Kay
Journal:  J Biomol NMR       Date:  2009-09-27       Impact factor: 2.835

6.  Long-lived states to monitor protein unfolding by proton NMR.

Authors:  Aurélien Bornet; Puneet Ahuja; Riddhiman Sarkar; Laetitia Fernandes; Sonia Hadji; Shirley Y Lee; Aydin Haririnia; David Fushman; Geoffrey Bodenhausen; Paul R Vasos
Journal:  Chemphyschem       Date:  2011-08-31       Impact factor: 3.102

7.  Highly efficient residue-selective labeling with isotope-labeled Ile, Leu, and Val using a new auxotrophic E. coli strain.

Authors:  Yohei Miyanoiri; Yojiro Ishida; Mitsuhiro Takeda; Tsutomu Terauchi; Masayori Inouye; Masatsune Kainosho
Journal:  J Biomol NMR       Date:  2016-06-06       Impact factor: 2.835

8.  A systematic mutagenesis-driven strategy for site-resolved NMR studies of supramolecular assemblies.

Authors:  Carlos Amero; M Asunción Durá; Marjolaine Noirclerc-Savoye; Arnaud Perollier; Benoit Gallet; Michael J Plevin; Thierry Vernet; Bruno Franzetti; Jérôme Boisbouvier
Journal:  J Biomol NMR       Date:  2011-05-29       Impact factor: 2.835

9.  Scrambling free combinatorial labeling of alanine-β, isoleucine-δ1, leucine-proS and valine-proS methyl groups for the detection of long range NOEs.

Authors:  Rime Kerfah; Michael J Plevin; Ombeline Pessey; Olivier Hamelin; Pierre Gans; Jerome Boisbouvier
Journal:  J Biomol NMR       Date:  2014-11-28       Impact factor: 2.835

10.  Very large residual dipolar couplings from deuterated ubiquitin.

Authors:  Joshua M Ward; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2012-07-25       Impact factor: 2.835

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