Literature DB >> 23769

The pH-dependence of second-order rate constants of enzyme modification may provide free-reactant pKa values.

K Brocklehurst, H B Dixon.   

Abstract

1. Reactions of enzymes with site-specific reagents may involve intermediate adsorptive complexes formed by parallel reactions in several protonic states. Accordingly, a profile of the apparent second-order rate constant for the modification reaction (Kobs., the observed rate constant under conditions where the reagent concentration is low enough for the reaction to be first-order in reagent) against pH can, in general, reflect free-reactant-state molecular pKa values only if a quasi-equilibrium condition exists around the reactive protonic state (EHR) of the adsorptive complex. 2. Usually the condition for quasi-equilibrium is expressed in terms of the rate constants around EHR: (formula: see text) i.e. k mod. less than k-2. This often cannot be assessed directly, particularly if it is not possible to determine kmod. 3. It is shown that kmod. must be much less than k-2, however, if kobs. (the pH-independent value of kobs.) less than k+2. 4. Since probable values of k+2 greater than 10(6)M-1.S-1 and since values of kobs. for many modification reactions less than 10(6)M-1.S-1, the equilibrium assumption should be valid, and kinetic study of such reactions should provide reactant-state pKa values. 5. This may not apply to catalyses, because for them the value of kcat./Km may exceed 5 X 10(5)M-1.S-1. 6. The conditions under which the formation of an intermediate complex by parallel pathways may come to quasi-equilibrium are discussed in the Appendix.

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Year:  1977        PMID: 23769      PMCID: PMC1183739          DOI: 10.1042/bj1670859

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  11 in total

1.  PH-dependence of the steady-state rate of a two-step enzymic reaction.

Authors:  K Brocklehurst; H B Dixon
Journal:  Biochem J       Date:  1976-04-01       Impact factor: 3.857

Review 2.  The intrinsic pKa-values of functional groups in enzymes: improper deductions from the pH-dependence of steady-state parameters.

Authors:  J R Knowles
Journal:  CRC Crit Rev Biochem       Date:  1976-11

3.  THE CHEMICAL REACTIVITY OF THE THIOL GROUP IN THE ACTIVE CENTRE OF FICIN.

Authors:  M R HOLLAWAY; A P MATHIAS; B R RABIN
Journal:  Biochim Biophys Acta       Date:  1964-10-23

4.  The quantitative relations between diffusion-controlled reaction rate and characteristic parameters in enzyme-substrate reaction systems. I. Neutral substrates.

Authors:  T T Li; K C Chou
Journal:  Sci Sin       Date:  1976 Jan-Feb

5.  Estimation of the dissociation constants of enzyme-substrate complexes from steady-state measurements. Interpretation of pH-independence of Km.

Authors:  A Cornish-Bowden
Journal:  Biochem J       Date:  1976-02-01       Impact factor: 3.857

6.  PK of the lysine amino group at the active site of acetoacetate decarboxylase.

Authors:  D E Schmidt; F H Westheimer
Journal:  Biochemistry       Date:  1971-03-30       Impact factor: 3.162

7.  The effects of hydrogen ion concentration on the simplest steady-state enzyme systems.

Authors:  P Ottolenghi
Journal:  Biochem J       Date:  1971-07       Impact factor: 3.857

8.  The pH-dependence of rates of individual steps in ficin catalysis.

Authors:  M R Hollaway; E Antonini; M Brunori
Journal:  Eur J Biochem       Date:  1971-12

9.  Preparation of fully active ficin from Ficus glabrata by covalent chromatography and characterization of its active centre by using 2,2'-depyridyl disulphide as a reactivity probe.

Authors:  J P Malthouse; K Brocklehurst
Journal:  Biochem J       Date:  1976-11       Impact factor: 3.857

10.  Reactions of papain and of low-molecular-weight thiols with some aromatic disulphides. 2,2'-Dipyridyl disulphide as a convenient active-site titrant for papain even in the presence of other thiols.

Authors:  K Brocklehurst; G Little
Journal:  Biochem J       Date:  1973-05       Impact factor: 3.857

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  21 in total

1.  In defence of the general validity of the Cha method of deriving rate equations. The importance of explicit recognition of the thermodynamic box in enzyme kinetics.

Authors:  C M Topham; K Brocklehurst
Journal:  Biochem J       Date:  1992-02-15       Impact factor: 3.857

2.  Differences in the chemical and catalytic characteristics of two crystallographically 'identical' enzyme catalytic sites. Characterization of actinidin and papain by a combination of pH-dependent substrate catalysis kinetics and reactivity probe studies targeted on the catalytic-site thiol group and its immediate microenvironment.

Authors:  E Salih; J P Malthouse; D Kowlessur; M Jarvis; M O'Driscoll; K Brocklehurst
Journal:  Biochem J       Date:  1987-10-01       Impact factor: 3.857

3.  Appendix: Analysis of pH-dependent kinetics in up to four reactive hydronic states.

Authors:  S M Brocklehurst; K Brocklehurst
Journal:  Biochem J       Date:  1988-12-01       Impact factor: 3.857

4.  Kinetic parameters of the acyl-enzyme mechanism and conditions for quasi-equilibrium and for optimal catalytic characteristics.

Authors:  K Brocklehurst; C M Topham
Journal:  Biochem J       Date:  1990-09-01       Impact factor: 3.857

5.  pH-activity curves for enzyme-catalysed reactions in which the hydron is a product or reactant.

Authors:  H B Dixon; K Brocklehurst; K F Tipton
Journal:  Biochem J       Date:  1987-12-01       Impact factor: 3.857

6.  A thiol-labelling reagent and reactivity probe containing electrophilic mercury and a chromophoric leaving group.

Authors:  B S Baines; K Brocklehurst
Journal:  Biochem J       Date:  1979-06-01       Impact factor: 3.857

7.  Characterization of the papain active centre by using two-protonic-state electrophiles as reactivity probes. Evidence for nucleophilic reactivity in the un-interrupted cysteine-25-histidine-159 interactive system.

Authors:  M Shipton; K Brochlehurst
Journal:  Biochem J       Date:  1978-05-01       Impact factor: 3.857

8.  The equilibrium assumption is valid for the kinetic treatment of most time-dependent protein-modification reactions.

Authors:  K Brocklehurst
Journal:  Biochem J       Date:  1979-09-01       Impact factor: 3.857

9.  Some classical errors in the kinetic analysis of enzyme reactions.

Authors:  K Brocklehurst; C M Topham
Journal:  Biochem J       Date:  1993-11-01       Impact factor: 3.857

10.  Mechanism of the reaction of papain with substrate-derived diazomethyl ketones. Implications for the difference in site specificity of halomethyl ketones for serine proteinases and cysteine proteinases and for stereoelectronic requirements in the papain catalytic mechanism.

Authors:  K Brocklehurst; J P Malthouse
Journal:  Biochem J       Date:  1978-11-01       Impact factor: 3.857

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