Literature DB >> 26335

Characterization of the papain active centre by using two-protonic-state electrophiles as reactivity probes. Evidence for nucleophilic reactivity in the un-interrupted cysteine-25-histidine-159 interactive system.

M Shipton, K Brochlehurst.   

Abstract

1.2,2'-Dipyridyl disulphide (2-Py-S-S-2-Py) and n-propyl 2-pyridyl disulphide (propyl-S-S-2-Py) were used as two-protonic-state reactivity probes to investigate the active centre of papain (EC 3.4.22.2).2. The existence of a striking rate optimum at pH approx. 4 in the reaction of papain not only with the symmetrical probe but also with the unsymmetrical probe is shown to constitute compelling evidence that the thiolate ion component of the cysteine-25-histidine-159 interactive system of papain possesses appreciable nucleophilic character. It is not a necessary requirement that the probe reagent should engage the imidazolium ion of histidine-159 in hydrogen-bonding for the sulphur atom of the interactive system to display nucleophilic character. The single proton-binding site of propyl-S-S-2-Py cannot simultaneously interrupt the active-centre ion pair and provide for rate enhancement as the pH is lowered towards 4. The possible implication of this for the mechanism of papain-catalysed hydrolysis is discussed. 3. The suspected difference in the active centres of papain and ficin (EC 3.4.22.3), which could be a lack in ficin of a carboxy group conformationally equivalent to that of aspartic acid-158 of papain is confirmed. The reactivity of the papain thiol group towards both probe reagents is controlled by two ionizations with pKa close to 4 that are positively co-operative. 4. In the reaction of papain with 2-Py-S-S-2-Py. the reactivity appears to be controlled also by an addition ionization with pKa approx. 5. Possible origins of this additional ionization are discussed. K. The spectral and ionization characteristics of propyl-S-S-2-Py are reported. 6. The reagent reacts rapidly with thiol groups at the sulphur atom distal from the pyridyl ring to provide, at pH values below 9, stoicheiometric release of 2-thiopyridone. This property, together with the ability of the reagent markedly to increase its electrophilicity consequent on protonation, suggests alkyl-2-pyridyl disulphides in general as valuable two-protonic-state reactivity probes with exceptional specificity for thiol groups.

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Year:  1978        PMID: 26335      PMCID: PMC1183967          DOI: 10.1042/bj1710385

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  29 in total

1.  A novel reactivity of papain and a convenient active site titration in the presence of other thiols.

Authors:  K Brocklehurst; G Little
Journal:  FEBS Lett       Date:  1970-07-29       Impact factor: 4.124

2.  PH-dependence of the steady-state rate of a two-step enzymic reaction.

Authors:  K Brocklehurst; H B Dixon
Journal:  Biochem J       Date:  1976-04-01       Impact factor: 3.857

3.  Specificity of papain-catalyzed transamidation reactions.

Authors:  M J MYCEK; J S FRUTON
Journal:  J Biol Chem       Date:  1957-05       Impact factor: 5.157

4.  The specificity of induced conformational changes. The case of yeast glyceraldehyde-3-phosphate dehydrogenase.

Authors:  L D Byers; D E Koshland
Journal:  Biochemistry       Date:  1975-08-12       Impact factor: 3.162

5.  Benzofuroxan as a thiol-specific reactivity probe. Kinetics of its reactions with papain, ficin, bromelain and low-molecular-weight thiols.

Authors:  M Shipton; K Brocklehurst
Journal:  Biochem J       Date:  1977-12-01       Impact factor: 3.857

6.  Covalent chromatography. Preparation of fully active papain from dried papaya latex.

Authors:  K Brocklehurst; J Carlsson; M P Kierstan; E M Crook
Journal:  Biochem J       Date:  1973-07       Impact factor: 3.857

7.  On the mode of activation of the catalytically essential sulfhydryl group of papain.

Authors:  L Polgár
Journal:  Eur J Biochem       Date:  1973-02-15

8.  Reactions of papain and of low-molecular-weight thiols with some aromatic disulphides. 2,2'-Dipyridyl disulphide as a convenient active-site titrant for papain even in the presence of other thiols.

Authors:  K Brocklehurst; G Little
Journal:  Biochem J       Date:  1973-05       Impact factor: 3.857

9.  The amino acid sequence around the active-site cysteine and histidine residues, and the buried cysteine residue in ficin.

Authors:  S S Husain; G Lowe
Journal:  Biochem J       Date:  1970-04       Impact factor: 3.857

10.  The reaction of papain with Ellman's reagent (5,5'-dithiobis- (2-nitrobenzoate) dianion).

Authors:  K Brocklehurst; M Kierstan; G Little
Journal:  Biochem J       Date:  1972-07       Impact factor: 3.857

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  27 in total

1.  Appendix: Analysis of pH-dependent kinetics in up to four reactive hydronic states.

Authors:  S M Brocklehurst; K Brocklehurst
Journal:  Biochem J       Date:  1988-12-01       Impact factor: 3.857

2.  A general framework of cysteine-proteinase mechanism deduced from studies on enzymes with structurally different analogous catalytic-site residues Asp-158 and -161 (papain and actinidin), Gly-196 (cathepsin B) and Asn-165 (cathepsin H). Kinetic studies up to pH 8 of the hydrolysis of N-alpha-benzyloxycarbonyl-L-arginyl-L-arginine 2-naphthylamide catalysed by cathepsin B and of L-arginine 2-naphthylamide catalysed by cathepsin H.

Authors:  F Willenbrock; K Brocklehurst
Journal:  Biochem J       Date:  1985-04-15       Impact factor: 3.857

3.  The equilibrium assumption is valid for the kinetic treatment of most time-dependent protein-modification reactions.

Authors:  K Brocklehurst
Journal:  Biochem J       Date:  1979-09-01       Impact factor: 3.857

4.  Supracrystallographic resolution of interactions contributing to enzyme catalysis by use of natural structural variants and reactivity-probe kinetics.

Authors:  K Brocklehurst; S M Brocklehurst; D Kowlessur; M O'Driscoll; G Patel; E Salih; W Templeton; E Thomas; C M Topham; F Willenbrock
Journal:  Biochem J       Date:  1988-12-01       Impact factor: 3.857

5.  Evidence for a close similarity in the catalytic sites of papain and ficin in near-neutral media despite differences in acidic and alkaline media. Kinetics of the reactions of papain and ficin with chloroacetate.

Authors:  K Brocklehurst; S M Mushiri; G Patel; F Willenbrock
Journal:  Biochem J       Date:  1982-01-01       Impact factor: 3.857

6.  Evidence for association-activation effects in reactions of papain from studies on its reactivity towards isomeric two-protonic-state reactivity probes.

Authors:  K Brocklehurst; J A Herbert; R Norris; H Suschitzky
Journal:  Biochem J       Date:  1979-11-01       Impact factor: 3.857

7.  Mechanism of the reaction of papain with substrate-derived diazomethyl ketones. Implications for the difference in site specificity of halomethyl ketones for serine proteinases and cysteine proteinases and for stereoelectronic requirements in the papain catalytic mechanism.

Authors:  K Brocklehurst; J P Malthouse
Journal:  Biochem J       Date:  1978-11-01       Impact factor: 3.857

8.  Natural structural variation in enzymes as a tool in the study of mechanism exemplified by a comparison of the catalytic-site structure and characteristics of cathepsin B and papain. pH-dependent kinetics of the reactions of cathepsin B from bovine spleen and from rat liver with a thiol-specific two-protonic-state probe (2,2'-dipyridyl disulphide) and with a specific synthetic substrate (N-alpha-benzyloxycarbonyl-L-arginyl-L-arginine 2-naphthylamide).

Authors:  F Willenbrock; K Brocklehurst
Journal:  Biochem J       Date:  1984-09-15       Impact factor: 3.857

9.  Ionization characteristics of the Cys-25/His-159 interactive system and of the modulatory group of papain: resolution of ambiguity by electronic perturbation of the quasi-2-mercaptopyridine leaving group in a new pyrimidyl disulphide reactivity probe.

Authors:  G W Mellor; E W Thomas; C M Topham; K Brocklehurst
Journal:  Biochem J       Date:  1993-02-15       Impact factor: 3.857

10.  Catalytic-site characteristics of the porcine calpain II 80 kDa/18 kDa heterodimer revealed by selective reaction of its essential thiol group with two-hydronic-state time-dependent inhibitors: evidence for a catalytic site Cys/His interactive system and an ionizing modulatory group.

Authors:  G W Mellor; S K Sreedharan; D Kowlessur; E W Thomas; K Brocklehurst
Journal:  Biochem J       Date:  1993-02-15       Impact factor: 3.857

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