Literature DB >> 7241

PH-dependence of the steady-state rate of a two-step enzymic reaction.

K Brocklehurst, H B Dixon.   

Abstract

1. The pH-dependence is considered of a reaction between E and S that proceeds through an intermediate ES under "Briggs-Haldane' conditions, i.e. there is a steady state in ES and [S]o greater than [E]T, where [S]o is the initial concentration of S and [E]T is the total concentration of all forms of E. Reactants and intermediates are assumed to interconvert in three protonic states (E equilibrium ES; EH equilibrium EHS; EH2 equilibrium EH2S), but only EHS provides products by an irreversible reaction whose rate constant is kcat. Protonations are assumed to be so fast that they are all at equilibrium. 2. The rate equation for this model is shown to be v = d[P]/dt = (kcat.[E]T[S]o/A)/[(KmBC/DA) + [S]o], where Km is the usual assembly of rate constants around EHS and A-D are functions of the form (1 + [H]/K1 + K2/[H]), in which K1 and K2 are: in A, the molecular ionization constants of ES; in B, the analogous constants of E; in C and D, apparent ionization constants composed of molecular ionization constants (of E or ES) and assemblies of rate constants. 3. As in earlier treatments of this type of reaction which involve either the assumption that the reactants and intermediate are in equilibrium or the assumption of Peller & Alberty [(1959) J. Am. Chem. Soc. 81, 5907-5914] that only EH and EHS interconvert directly, the pH-dependence of kcat. is determined only by A. 4. The pH-dependence of Km is determined in general by B-C/A-D, but when reactants and intermediate are in equilibrium, C identical to D and this expression simplifies to B/A. 5. The pH-dependence of kcat./Km, i.e. of the rate when [S]o less than Km, is not necessarily a simple bell-shaped curve characterized only by the ionization constants of B, but is a complex curve characterized by D/B-C. 6. Various situations are discussed in which the pH-dependence of kcat./Km is determined by assemblies simpler than D/B-C. The special situation in which a kcat./Km-pH profile provides the molecular pKa values of the intermediate ES complex is delineated.

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Year:  1976        PMID: 7241      PMCID: PMC1172802          DOI: 10.1042/bj1550061

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  26 in total

1.  Factorization of the Michaelis functions.

Authors:  H B Dixon
Journal:  Biochem J       Date:  1975-11       Impact factor: 3.857

2.  Estimation of the dissociation constants of enzyme-substrate complexes from steady-state measurements. Interpretation of pH-independence of Km.

Authors:  A Cornish-Bowden
Journal:  Biochem J       Date:  1976-02-01       Impact factor: 3.857

3.  PK of the lysine amino group at the active site of acetoacetate decarboxylase.

Authors:  D E Schmidt; F H Westheimer
Journal:  Biochemistry       Date:  1971-03-30       Impact factor: 3.162

4.  Curves of ligand binding. The use of hyperbolic functions for expressing titration curves.

Authors:  H B Dixon
Journal:  Biochem J       Date:  1974-03       Impact factor: 3.857

5.  Shapes of curves of pH-dependence of reactions.

Authors:  H B Dixon
Journal:  Biochem J       Date:  1973-01       Impact factor: 3.857

6.  Negatively co-operative ligand binding.

Authors:  H B Dixon; K F Tipton
Journal:  Biochem J       Date:  1973-08       Impact factor: 3.857

7.  The mutability of stem bromelain: evidence for perturbation by structural transitions of the parameters that characterize the reaction of the essential thiol group of bromelain with 2,2'-dipyridyl disulphide.

Authors:  K Brocklehurst; E M Crook; M Kierstan
Journal:  Biochem J       Date:  1972-07       Impact factor: 3.857

8.  The effects of hydrogen ion concentration on the simplest steady-state enzyme systems.

Authors:  P Ottolenghi
Journal:  Biochem J       Date:  1971-07       Impact factor: 3.857

9.  Initial and equilibrium 18O, 14C, 3H, and 2H exchange rates as probes of the fumarase reaction mechanism.

Authors:  J N Hansen; E C Dinovo; P D Boyer
Journal:  J Biol Chem       Date:  1969-11-25       Impact factor: 5.157

10.  Chymotrypsin catalysis. Evidence for a new intermediate.

Authors:  M Caplow
Journal:  J Am Chem Soc       Date:  1969-06-18       Impact factor: 15.419

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  24 in total

1.  Changes in the kinetic behaviour of threonine transport into Trypanosoma brucei elicited by variation in hydrogen ion concentration.

Authors:  H P Voorheis
Journal:  Biochem J       Date:  1977-04-15       Impact factor: 3.857

2.  In defence of the general validity of the Cha method of deriving rate equations. The importance of explicit recognition of the thermodynamic box in enzyme kinetics.

Authors:  C M Topham; K Brocklehurst
Journal:  Biochem J       Date:  1992-02-15       Impact factor: 3.857

3.  Appendix: Analysis of pH-dependent kinetics in up to four reactive hydronic states.

Authors:  S M Brocklehurst; K Brocklehurst
Journal:  Biochem J       Date:  1988-12-01       Impact factor: 3.857

4.  Kinetic parameters of the acyl-enzyme mechanism and conditions for quasi-equilibrium and for optimal catalytic characteristics.

Authors:  K Brocklehurst; C M Topham
Journal:  Biochem J       Date:  1990-09-01       Impact factor: 3.857

5.  pH-activity curves for enzyme-catalysed reactions in which the hydron is a product or reactant.

Authors:  H B Dixon; K Brocklehurst; K F Tipton
Journal:  Biochem J       Date:  1987-12-01       Impact factor: 3.857

6.  Benzofuroxan as a thiol-specific reactivity probe. Kinetics of its reactions with papain, ficin, bromelain and low-molecular-weight thiols.

Authors:  M Shipton; K Brocklehurst
Journal:  Biochem J       Date:  1977-12-01       Impact factor: 3.857

7.  The pH-dependence of second-order rate constants of enzyme modification may provide free-reactant pKa values.

Authors:  K Brocklehurst; H B Dixon
Journal:  Biochem J       Date:  1977-12-01       Impact factor: 3.857

8.  Characterization of the papain active centre by using two-protonic-state electrophiles as reactivity probes. Evidence for nucleophilic reactivity in the un-interrupted cysteine-25-histidine-159 interactive system.

Authors:  M Shipton; K Brochlehurst
Journal:  Biochem J       Date:  1978-05-01       Impact factor: 3.857

9.  A general framework of cysteine-proteinase mechanism deduced from studies on enzymes with structurally different analogous catalytic-site residues Asp-158 and -161 (papain and actinidin), Gly-196 (cathepsin B) and Asn-165 (cathepsin H). Kinetic studies up to pH 8 of the hydrolysis of N-alpha-benzyloxycarbonyl-L-arginyl-L-arginine 2-naphthylamide catalysed by cathepsin B and of L-arginine 2-naphthylamide catalysed by cathepsin H.

Authors:  F Willenbrock; K Brocklehurst
Journal:  Biochem J       Date:  1985-04-15       Impact factor: 3.857

10.  The equilibrium assumption is valid for the kinetic treatment of most time-dependent protein-modification reactions.

Authors:  K Brocklehurst
Journal:  Biochem J       Date:  1979-09-01       Impact factor: 3.857

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