Literature DB >> 23634065

(1S,3R,8R,9R,10S)-2,2-Dibromo-3,7,7,10-tetra-methyl-9β,10β-ep-oxy-3,7,7,10-tetra-methyl-tricyclo-[6.4.0.0(1,3)]dodeca-ne.

Abdelouahd Oukhrib1, Ahmed Benharref, Mohamed Saadi, Moha Berraho, Lahcen El Ammari.   

Abstract

The title compound, C16H24Br2O, was synthesized from β-himachalene (3,5,5,9-tetra-methyl-2,4a,5,6,7,8-hexa-hydro-1H-benzocyclo-heptene), which was isolated from the essential oil of the Atlas cedar (Cedrus atlantica). The mol-ecule contains fused six- and seven-membered rings, each linked to a three-membered ring. The six-membered ring has a half-chair conformation, while the seven-membered ring displays a chair conformation. The dihedral angle between the mean planes through the six- and seven-membered rings is 39.55 (12)°. The two three-membered rings, linked to the six- and seven-membered rings, are nearly perpendicular to the six-membered ring, making dihedral angles of 78.6 (2) and 80.5 (2)°, respectively. The absolute structure was established unambiguously from anomalous dispersion effects. In the crystal, each mol-ecule is linked to its symmetry-equivalent partner by C-H⋯O hydrogen bonds, forming zigzag chains parallel to [100].

Entities:  

Year:  2013        PMID: 23634065      PMCID: PMC3629578          DOI: 10.1107/S1600536813006077

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isolation of β-himachalene, see: Joseph & Dev (1968 ▶); Plattier & Teisseire (1974 ▶). For the reactivity of this sesquiterpene, see: Lassaba et al. (1998 ▶); Chekroun et al. (2000 ▶); El Jamili et al. (2002 ▶); Sbai et al. (2002 ▶); Dakir et al. (2004 ▶). For its biological activity, see: Daoubi et al. (2004 ▶). For ring puckering calculations, see: Cremer & Pople (1975 ▶). For a similar structure, see: Benharref et al. (2010 ▶).

Experimental

Crystal data

C16H24Br2O M = 392.17 Orthorhombic, a = 7.9772 (4) Å b = 12.8562 (7) Å c = 16.1719 (8) Å V = 1658.53 (15) Å3 Z = 4 Mo Kα radiation μ = 4.88 mm−1 T = 296 K 0.41 × 0.32 × 0.27 mm

Data collection

Bruker X8 APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008 ▶) T min = 0.407, T max = 0.747 15200 measured reflections 4637 independent reflections 3298 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.074 S = 1.02 4637 reflections 173 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.46 e Å−3 Absolute structure: Flack & Bernardinelli (2000 ▶), 1998 Friedel pairs Flack parameter: 0.014 (10) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813006077/fj2620sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813006077/fj2620Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813006077/fj2620Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H24Br2OF(000) = 792
Mr = 392.17Dx = 1.571 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: p 2ac 2abCell parameters from 4637 reflections
a = 7.9772 (4) Åθ = 2.9–29.6°
b = 12.8562 (7) ŵ = 4.88 mm1
c = 16.1719 (8) ÅT = 296 K
V = 1658.53 (15) Å3Block, colourless
Z = 40.41 × 0.32 × 0.27 mm
Bruker X8 APEX diffractometer4637 independent reflections
Radiation source: fine-focus sealed tube3298 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.036
φ and ω scansθmax = 29.6°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008)h = −11→11
Tmin = 0.407, Tmax = 0.747k = −17→15
15200 measured reflectionsl = −22→14
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.033w = 1/[σ2(Fo2) + (0.0307P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.074(Δ/σ)max = 0.001
S = 1.02Δρmax = 0.41 e Å3
4637 reflectionsΔρmin = −0.46 e Å3
173 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0016 (5)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack & Bernardinelli (2000), 1998 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.014 (10)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
C10.4959 (3)0.9764 (2)0.00560 (15)0.0325 (5)
C20.6592 (3)0.9395 (2)0.04293 (16)0.0404 (6)
C30.5934 (3)0.8863 (2)−0.03369 (19)0.0448 (7)
C40.6887 (4)0.9048 (3)−0.1148 (2)0.0587 (9)
H4A0.75620.8439−0.12700.070*
H4B0.76410.9633−0.10760.070*
C50.5722 (4)0.9266 (3)−0.1883 (2)0.0676 (11)
H5A0.63000.9089−0.23920.081*
H5B0.47410.8824−0.18410.081*
C60.5167 (4)1.0390 (3)−0.19240 (18)0.0596 (9)
H6A0.46191.0491−0.24540.072*
H6B0.61691.0816−0.19270.072*
C70.3993 (3)1.0825 (2)−0.12543 (16)0.0433 (7)
C80.4885 (3)1.0819 (2)−0.03933 (15)0.0316 (5)
H80.60551.1004−0.05060.038*
C90.4239 (3)1.1658 (2)0.01801 (16)0.0374 (6)
H90.48071.23300.01240.045*
O10.2442 (2)1.17299 (17)0.03278 (13)0.0503 (5)
C100.3546 (3)1.1457 (2)0.10036 (16)0.0454 (7)
C110.3355 (3)1.0354 (3)0.12860 (17)0.0540 (8)
H11A0.22981.02840.15770.065*
H11B0.42471.01930.16730.065*
C120.3405 (3)0.9577 (2)0.05873 (17)0.0434 (6)
H12A0.24050.96480.02510.052*
H12B0.34300.88770.08100.052*
C130.5257 (5)0.7765 (3)−0.0288 (3)0.0738 (11)
H13A0.49020.7545−0.08280.111*
H13B0.43200.77470.00840.111*
H13C0.61190.7307−0.00900.111*
C140.3664 (5)1.1961 (3)−0.1496 (2)0.0664 (9)
H14A0.29321.2275−0.10970.100*
H14B0.31491.1984−0.20320.100*
H14C0.47071.2333−0.15110.100*
C150.2311 (3)1.0239 (3)−0.12733 (19)0.0626 (9)
H15A0.24920.9523−0.11290.094*
H15B0.18391.0279−0.18180.094*
H15C0.15521.0548−0.08840.094*
C160.3686 (5)1.2270 (3)0.1671 (2)0.0763 (11)
H16A0.44491.20340.20900.115*
H16B0.26021.23870.19130.115*
H16C0.40941.29070.14360.115*
Br10.85914 (3)1.02421 (3)0.041525 (19)0.05303 (11)
Br20.66225 (4)0.86201 (3)0.14535 (2)0.07179 (14)
U11U22U33U12U13U23
C10.0318 (11)0.0302 (14)0.0355 (13)−0.0019 (12)0.0017 (10)−0.0015 (12)
C20.0370 (12)0.0395 (15)0.0446 (14)0.0013 (12)−0.0010 (13)0.0059 (12)
C30.0425 (14)0.0336 (17)0.0584 (17)0.0003 (11)−0.0005 (13)−0.0066 (14)
C40.0548 (17)0.059 (2)0.0627 (19)0.0102 (15)0.0065 (15)−0.0287 (17)
C50.074 (2)0.086 (3)0.0422 (17)−0.001 (2)0.0017 (16)−0.0345 (18)
C60.0609 (18)0.088 (3)0.0302 (14)−0.002 (2)−0.0040 (12)−0.0032 (16)
C70.0497 (15)0.0508 (19)0.0295 (13)−0.0009 (13)−0.0044 (11)−0.0007 (12)
C80.0321 (11)0.0323 (14)0.0303 (12)−0.0011 (10)0.0037 (11)0.0021 (11)
C90.0376 (12)0.0331 (17)0.0415 (15)0.0005 (11)0.0017 (11)−0.0021 (12)
O10.0408 (9)0.0570 (14)0.0532 (12)0.0160 (9)0.0026 (9)−0.0053 (11)
C100.0388 (13)0.0579 (19)0.0397 (14)0.0083 (15)0.0041 (13)−0.0110 (13)
C110.0461 (15)0.075 (2)0.0411 (15)0.0023 (17)0.0126 (13)0.0073 (15)
C120.0327 (12)0.0433 (17)0.0543 (16)−0.0012 (13)0.0049 (12)0.0120 (13)
C130.066 (2)0.033 (2)0.123 (4)−0.0004 (16)−0.013 (2)−0.007 (2)
C140.079 (2)0.071 (2)0.0487 (17)0.011 (2)−0.0039 (19)0.0207 (17)
C150.0542 (16)0.090 (3)0.0436 (16)−0.0074 (19)−0.0102 (13)−0.0064 (19)
C160.076 (2)0.089 (3)0.064 (2)0.012 (2)0.0117 (19)−0.039 (2)
Br10.03457 (13)0.0605 (2)0.06396 (19)−0.00414 (15)−0.00528 (13)−0.00561 (16)
Br20.0688 (2)0.0793 (3)0.0673 (2)0.0137 (2)−0.00527 (18)0.03512 (19)
C1—C21.512 (3)C9—O11.457 (3)
C1—C121.527 (3)C9—C101.465 (4)
C1—C31.533 (4)C9—H90.9800
C1—C81.540 (4)O1—C101.447 (3)
C2—C31.510 (4)C10—C111.498 (4)
C2—Br11.931 (3)C10—C161.507 (4)
C2—Br21.933 (3)C11—C121.508 (4)
C3—C131.513 (5)C11—H11A0.9700
C3—C41.534 (4)C11—H11B0.9700
C4—C51.535 (5)C12—H12A0.9700
C4—H4A0.9700C12—H12B0.9700
C4—H4B0.9700C13—H13A0.9600
C5—C61.512 (6)C13—H13B0.9600
C5—H5A0.9700C13—H13C0.9600
C5—H5B0.9700C14—H14A0.9600
C6—C71.537 (4)C14—H14B0.9600
C6—H6A0.9700C14—H14C0.9600
C6—H6B0.9700C15—H15A0.9600
C7—C141.534 (5)C15—H15B0.9600
C7—C151.540 (4)C15—H15C0.9600
C7—C81.564 (3)C16—H16A0.9600
C8—C91.513 (4)C16—H16B0.9600
C8—H80.9800C16—H16C0.9600
C2—C1—C12115.2 (2)O1—C9—C8118.8 (2)
C2—C1—C359.43 (18)C10—C9—C8124.1 (2)
C12—C1—C3121.8 (2)O1—C9—H9114.5
C2—C1—C8119.8 (2)C10—C9—H9114.5
C12—C1—C8111.9 (2)C8—C9—H9114.5
C3—C1—C8119.3 (2)C10—O1—C960.61 (16)
C3—C2—C160.96 (18)O1—C10—C960.03 (16)
C3—C2—Br1122.22 (19)O1—C10—C11113.5 (2)
C1—C2—Br1122.02 (19)C9—C10—C11118.8 (2)
C3—C2—Br2118.3 (2)O1—C10—C16114.7 (3)
C1—C2—Br2120.94 (17)C9—C10—C16120.1 (3)
Br1—C2—Br2106.89 (12)C11—C10—C16116.5 (3)
C2—C3—C13120.3 (3)C10—C11—C12113.3 (2)
C2—C3—C159.61 (18)C10—C11—H11A108.9
C13—C3—C1120.1 (3)C12—C11—H11A108.9
C2—C3—C4117.3 (2)C10—C11—H11B108.9
C13—C3—C4111.4 (3)C12—C11—H11B108.9
C1—C3—C4119.3 (3)H11A—C11—H11B107.7
C3—C4—C5113.0 (3)C11—C12—C1109.8 (2)
C3—C4—H4A109.0C11—C12—H12A109.7
C5—C4—H4A109.0C1—C12—H12A109.7
C3—C4—H4B109.0C11—C12—H12B109.7
C5—C4—H4B109.0C1—C12—H12B109.7
H4A—C4—H4B107.8H12A—C12—H12B108.2
C6—C5—C4112.7 (3)C3—C13—H13A109.5
C6—C5—H5A109.0C3—C13—H13B109.5
C4—C5—H5A109.0H13A—C13—H13B109.5
C6—C5—H5B109.0C3—C13—H13C109.5
C4—C5—H5B109.0H13A—C13—H13C109.5
H5A—C5—H5B107.8H13B—C13—H13C109.5
C5—C6—C7119.7 (3)C7—C14—H14A109.5
C5—C6—H6A107.4C7—C14—H14B109.5
C7—C6—H6A107.4H14A—C14—H14B109.5
C5—C6—H6B107.4C7—C14—H14C109.5
C7—C6—H6B107.4H14A—C14—H14C109.5
H6A—C6—H6B106.9H14B—C14—H14C109.5
C14—C7—C6105.7 (3)C7—C15—H15A109.5
C14—C7—C15108.2 (3)C7—C15—H15B109.5
C6—C7—C15109.8 (3)H15A—C15—H15B109.5
C14—C7—C8108.1 (2)C7—C15—H15C109.5
C6—C7—C8110.4 (2)H15A—C15—H15C109.5
C15—C7—C8114.3 (2)H15B—C15—H15C109.5
C9—C8—C1110.6 (2)C10—C16—H16A109.5
C9—C8—C7112.7 (2)C10—C16—H16B109.5
C1—C8—C7116.3 (2)H16A—C16—H16B109.5
C9—C8—H8105.4C10—C16—H16C109.5
C1—C8—H8105.4H16A—C16—H16C109.5
C7—C8—H8105.4H16B—C16—H16C109.5
O1—C9—C1059.36 (18)
D—H···AD—HH···AD···AD—H···A
C9—H9···O1i0.982.533.391 (3)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C9—H9⋯O1i 0.982.533.391 (3)146

Symmetry code: (i) .

  6 in total

1.  Regio- and stereoselectivity of beta-himachalene epoxidation by m-CPBA. A theoretical study.

Authors:  A Chekroun; A Jarid; A Benharref; A Boutalib
Journal:  J Org Chem       Date:  2000-07-14       Impact factor: 4.354

2.  Screening study for potential lead compounds for natural product-based fungicides: I. Synthesis and in vitro evaluation of coumarins against Botrytis cinerea.

Authors:  Mourad Daoubi; Rosa Durán-Patrón; Mohamed Hmamouchi; Rosario Hernández-Galán; Ahmed Benharref; Isidro G Collado
Journal:  Pest Manag Sci       Date:  2004-09       Impact factor: 4.845

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  (1S,3R,8S,9S,10R)-2,2-Dichloro-9,10-epoxy-3,7,7,10-tetramethyltricyclo[6.4.0.0(1,3)]dodecane and (1S,3R,8S,10R)-2,2-dichloro-3,7,7,10-tetramethyltricyclo[6.4.0.0(1,3)]dodecan-9-one.

Authors:  F Sbai; M Dakir; A Auhmani; H El Jamili; M Akssira; A Benharref; A Kenz; M Pierrot
Journal:  Acta Crystallogr C       Date:  2002-07-31       Impact factor: 1.172

5.  (1S,3R,8S,9R,10S)-2,2-Dichloro-3,7,7,10-tetra-methyl-9,10-ep-oxy-tricyclo-[6.4.0.0]dodeca-ne.

Authors:  Ahmed Benharref; Lahcen El Ammari; Daniel Avignant; Abdelghani Oudahmane; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-10

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  10 in total

1.  (1S,3S,8R,9S,11R)-10,10-Di-chloro-3,7,7,11-tetra-methyl-tetra-cyclo[6.5.0.0(1,3).0(9,11)]trideca-ne.

Authors:  Ahmed Benharref; Najia Ourhriss; Lahcen El Ammari; Mohamed Saadi; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-22

2.  Crystal structure of 1-isopropyl-4,7-dimethyl-3-nitro-naphthalene.

Authors:  Ahmed Benharref; Jamal Elkarroumi; Lahcen El Ammari; Mohamed Saadi; Moha Berraho
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-08-15

3.  Crystal structure of (1R,2S,4R,7R,8S,9R)-3,3-dichloro-8,9-epoxy-4,8,12,12-tetramethyltricyclo[5.5.0.0(2,4)]dodecane.

Authors:  Ahmed Benzalim; Aziz Auhmani; My Youssef Ait Itto; Jean-Claude Daran; Abdelwahed Auhmani
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-07-04

4.  (1S,3R,8R,10R)-2,2-Di-bromo-3,7,7,10-tetra-methyl-tri-cyclo-[6.4.0.0(1,3)]dodecan-9-one.

Authors:  Ahmed Benharref; Noureddine Mazoir; Jean-Claude Daran; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-11-16

5.  (1R,4R,6S,7R)-5,5-Di-bromo-1,4,8,8-tetra-methyl-tri-cyclo-[5.4.1.0(4,6)]dodecan-12-one.

Authors:  Mohamed Zaki; Ahmed Benharref; Jean-Claude Daran; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-09

6.  (1S,3R,8R,9S,11R)-2,2-Di-bromo-10,10-di-chloro-3,7,7,11-tetra-methyl-tetra-cyclo-[6.5.0.0(1,3).0(9,11)]trideca-ne.

Authors:  Najia Ourhriss; Ahmed Benharref; Mohamed Saadi; Moha Berraho; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-13

7.  (1S,3R,8R,9S,11R)-10,10-Di-bromo-2,2-di-chloro-3,7,7,11-tetra-methyl-tetra-cyclo-[6.5.0.0(1,3).0(9,11)]trideca-ne.

Authors:  Abdelouahd Oukhrib; Ahmed Benharref; Mohamed Saadi; Moha Berraho; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-17

8.  (1S,3S,8R,9S,11R)-10,10-Di-bromo-3,7,7,11-tetra-methyl-tetra-cyclo-[6.5.0.0(1,3).0(9,11)]trideca-ne.

Authors:  Ahmed Benharref; Jamal El Karroumi; Lahcen El Ammari; Mohamed Saadi; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-13

9.  (1S,3R,8R,11S)-11-Bromo-10-bromo-methyl-2,2-di-chloro-3,7,7-tri-methyl-tricyclo-[6.4.0.0(1,3)]dodec-9-ene.

Authors:  Ahmed Benharref; Jamal El Karroumi; Lahcen El Ammari; Mohamed Saadi; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-20

10.  (1S,2R,7R,8S,10R)-9,9-Di-bromo-2,6,6,10-tetra-methyl-1α,2α-ep-oxy-tri-cyclo-[5.5.0.0(8,10)]dodeca-ne.

Authors:  Ahmed Benharref; Jamal El Karroumi; Lahcen El Ammari; Mohamed Saadi; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-08
  10 in total

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