Literature DB >> 24109365

(1S,3R,8R,11S)-11-Bromo-10-bromo-methyl-2,2-di-chloro-3,7,7-tri-methyl-tricyclo-[6.4.0.0(1,3)]dodec-9-ene.

Ahmed Benharref1, Jamal El Karroumi, Lahcen El Ammari, Mohamed Saadi, Moha Berraho.   

Abstract

The title compound, C16H22Br2Cl2, was synthesized from β-him-achalene (3,5,5,9-tetra-methyl-2,4a,5,6,7,8-hexa-hydro-1H-benzo-cyclo-heptene), which was isolated from the essential oil of the Atlas cedar (Cedrus Atlantica). The mol-ecule is built up from fused six- and seven-membered rings and an appended three-membered ring. The six-membered ring has a half-chair conformation, whereas the seven-membered ring displays a chair conformation. The dihedral angle between the two best plane through each ring is 59.5 (2)°. No specific inter-molecular inter-actions were discerned in the crystal packing.

Entities:  

Year:  2013        PMID: 24109365      PMCID: PMC3793778          DOI: 10.1107/S1600536813019697

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the reactivity and biological properties of β-himachalene, see: El Haib et al. (2011 ▶); El Jamili et al. (2002 ▶); Daoubi et al. (2004 ▶). For related structures, see: Oukhrib et al. (2013 ▶); Ourhriss et al. (2013 ▶); Benharref et al.(2013 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C16H22Br2Cl2 M = 445.06 Orthorhombic, a = 8.2594 (7) Å b = 13.0352 (11) Å c = 16.6241 (13) Å V = 1789.8 (3) Å3 Z = 4 Mo Kα radiation μ = 4.82 mm−1 T = 293 K 0.20 × 0.15 × 0.12 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SHELXS97; Sheldrick,2008 ▶) T min = 0.423, T max = 0.617 10693 measured reflections 3654 independent reflections 3183 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.102 S = 1.05 3654 reflections 184 parameters H-atom parameters constrained Δρmax = 0.55 e Å−3 Δρmin = −0.54 e Å−3 Absolute structure: Flack & Bernardinelli (2000 ▶), 614 Friedel pairs Absolute structure parameter: 0.022 (13) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813019697/tk5241sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813019697/tk5241Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813019697/tk5241Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H22Br2Cl2F(000) = 888
Mr = 445.06Dx = 1.652 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3653 reflections
a = 8.2594 (7) Åθ = 2.8–26.4°
b = 13.0352 (11) ŵ = 4.82 mm1
c = 16.6241 (13) ÅT = 293 K
V = 1789.8 (3) Å3Block, colourless
Z = 40.20 × 0.15 × 0.12 mm
Bruker APEXII CCD diffractometer3654 independent reflections
Radiation source: fine-focus sealed tube3183 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
ω and φ scansθmax = 26.4°, θmin = 2.5°
Absorption correction: multi-scan SHELXS97 (Sheldrick,2008)h = −10→10
Tmin = 0.423, Tmax = 0.617k = −13→16
10693 measured reflectionsl = −11→20
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.102w = 1/[σ2(Fo2) + (0.0406P)2 + 1.2463P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
3654 reflectionsΔρmax = 0.55 e Å3
184 parametersΔρmin = −0.54 e Å3
0 restraintsAbsolute structure: Flack & Bernardinelli (2000), 614 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.022 (13)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3469 (4)0.4202 (3)0.7271 (2)0.0346 (8)
C20.1795 (4)0.3776 (4)0.7462 (3)0.0440 (9)
C30.2012 (4)0.4409 (4)0.6715 (2)0.0446 (9)
C40.1967 (6)0.3884 (4)0.5903 (3)0.0570 (12)
H4A0.09150.39990.56590.068*
H4B0.20950.31510.59790.068*
C50.3291 (6)0.4270 (5)0.5327 (3)0.0598 (13)
H5A0.29270.41880.47750.072*
H5B0.34800.49940.54210.072*
C60.4858 (7)0.3684 (5)0.5444 (3)0.0721 (15)
H6A0.55650.38530.49980.086*
H6B0.46100.29590.54010.086*
C70.5838 (5)0.3841 (3)0.6231 (2)0.0446 (9)
C80.4798 (5)0.3470 (3)0.6986 (2)0.0354 (8)
H80.42470.28400.68170.043*
C90.5846 (5)0.3179 (3)0.7684 (2)0.0384 (8)
H90.65270.26190.76110.046*
C100.5903 (4)0.3636 (3)0.8394 (2)0.0373 (8)
C110.4874 (5)0.4553 (3)0.8571 (2)0.0370 (8)
H110.40090.43460.89400.044*
C120.4109 (5)0.5026 (3)0.7827 (2)0.0391 (8)
H12A0.32280.54750.79870.047*
H12B0.49080.54360.75450.047*
C130.1283 (6)0.5488 (4)0.6685 (3)0.0684 (14)
H13A0.13010.57840.72140.103*
H13B0.01850.54480.64980.103*
H13C0.19040.59070.63250.103*
C140.7278 (9)0.3099 (6)0.6141 (4)0.093 (2)
H14A0.80670.32420.65500.139*
H14B0.77610.31880.56200.139*
H14C0.69040.24060.61960.139*
C150.6474 (9)0.4891 (5)0.6292 (4)0.0845 (19)
H15A0.55910.53650.63450.127*
H15B0.70830.50520.58160.127*
H15C0.71650.49430.67540.127*
C160.6964 (5)0.3222 (4)0.9042 (3)0.0507 (10)
H16A0.76450.37690.92470.061*
H16B0.76650.26980.88170.061*
Cl30.14150 (16)0.24471 (10)0.74083 (8)0.0694 (3)
Cl40.06998 (15)0.42878 (14)0.82812 (8)0.0734 (4)
Br10.61787 (8)0.56321 (4)0.90951 (3)0.07068 (18)
Br20.57150 (8)0.26329 (6)0.99305 (4)0.0885 (2)
U11U22U33U12U13U23
C10.0338 (17)0.035 (2)0.0352 (18)−0.0032 (15)−0.0007 (13)0.0027 (15)
C20.0327 (18)0.053 (3)0.046 (2)−0.0103 (17)0.0056 (15)0.0024 (19)
C30.0342 (18)0.051 (2)0.048 (2)−0.0075 (18)−0.0073 (15)0.010 (2)
C40.051 (2)0.076 (3)0.045 (2)−0.021 (2)−0.0154 (19)0.004 (2)
C50.066 (3)0.080 (3)0.033 (2)−0.020 (3)−0.0090 (18)0.011 (2)
C60.075 (3)0.091 (4)0.051 (3)−0.017 (3)0.001 (2)−0.001 (3)
C70.045 (2)0.055 (2)0.0338 (19)−0.007 (2)0.0081 (16)−0.0015 (17)
C80.0395 (19)0.033 (2)0.0341 (19)−0.0040 (15)0.0043 (14)−0.0020 (15)
C90.0385 (19)0.0315 (19)0.045 (2)0.0062 (15)0.0033 (16)0.0031 (16)
C100.0346 (18)0.040 (2)0.0373 (19)−0.0006 (16)0.0011 (15)0.0059 (16)
C110.0401 (19)0.037 (2)0.0336 (19)0.0006 (15)0.0026 (14)−0.0077 (16)
C120.040 (2)0.036 (2)0.041 (2)0.0055 (16)−0.0017 (16)−0.0041 (16)
C130.052 (3)0.075 (4)0.079 (3)0.019 (3)−0.015 (2)0.016 (3)
C140.085 (4)0.112 (5)0.082 (4)0.024 (4)0.046 (4)0.006 (4)
C150.097 (5)0.082 (4)0.074 (4)−0.046 (4)0.021 (3)−0.004 (3)
C160.046 (2)0.057 (3)0.049 (2)0.0047 (18)0.0030 (19)0.017 (2)
Cl30.0657 (7)0.0632 (8)0.0793 (8)−0.0286 (6)0.0057 (6)0.0147 (6)
Cl40.0472 (6)0.1082 (11)0.0649 (7)0.0060 (7)0.0215 (5)0.0002 (8)
Br10.0901 (4)0.0583 (3)0.0637 (3)−0.0039 (3)−0.0277 (3)−0.0181 (2)
Br20.0869 (4)0.1127 (5)0.0659 (4)−0.0004 (4)0.0151 (3)0.0420 (3)
C1—C121.513 (5)C8—H80.9800
C1—C21.524 (5)C9—C101.323 (6)
C1—C81.529 (5)C9—H90.9300
C1—C31.541 (5)C10—C161.489 (6)
C2—C31.502 (6)C10—C111.495 (5)
C2—Cl31.763 (5)C11—C121.520 (5)
C2—Cl41.765 (4)C11—Br11.975 (4)
C3—C41.514 (7)C11—H110.9800
C3—C131.531 (7)C12—H12A0.9700
C4—C51.538 (6)C12—H12B0.9700
C4—H4A0.9700C13—H13A0.9600
C4—H4B0.9700C13—H13B0.9600
C5—C61.515 (8)C13—H13C0.9600
C5—H5A0.9700C14—H14A0.9600
C5—H5B0.9700C14—H14B0.9600
C6—C71.552 (7)C14—H14C0.9600
C6—H6A0.9700C15—H15A0.9600
C6—H6B0.9700C15—H15B0.9600
C7—C151.470 (7)C15—H15C0.9600
C7—C141.540 (8)C16—Br21.959 (4)
C7—C81.596 (5)C16—H16A0.9700
C8—C91.497 (5)C16—H16B0.9700
C12—C1—C2116.6 (3)C9—C8—H8106.2
C12—C1—C8112.4 (3)C1—C8—H8106.2
C2—C1—C8119.2 (3)C7—C8—H8106.2
C12—C1—C3121.0 (3)C10—C9—C8126.8 (3)
C2—C1—C358.7 (3)C10—C9—H9116.6
C8—C1—C3118.9 (3)C8—C9—H9116.6
C3—C2—C161.2 (2)C9—C10—C16120.2 (4)
C3—C2—Cl3121.2 (3)C9—C10—C11121.0 (3)
C1—C2—Cl3120.6 (3)C16—C10—C11118.8 (3)
C3—C2—Cl4119.5 (3)C10—C11—C12113.6 (3)
C1—C2—Cl4119.2 (3)C10—C11—Br1110.2 (3)
Cl3—C2—Cl4108.6 (2)C12—C11—Br1107.3 (3)
C2—C3—C4119.1 (4)C10—C11—H11108.5
C2—C3—C13118.9 (4)C12—C11—H11108.5
C4—C3—C13112.1 (4)Br1—C11—H11108.5
C2—C3—C160.1 (2)C1—C12—C11110.7 (3)
C4—C3—C1118.4 (4)C1—C12—H12A109.5
C13—C3—C1119.2 (4)C11—C12—H12A109.5
C3—C4—C5112.9 (4)C1—C12—H12B109.5
C3—C4—H4A109.0C11—C12—H12B109.5
C5—C4—H4A109.0H12A—C12—H12B108.1
C3—C4—H4B109.0C3—C13—H13A109.5
C5—C4—H4B109.0C3—C13—H13B109.5
H4A—C4—H4B107.8H13A—C13—H13B109.5
C6—C5—C4111.3 (4)C3—C13—H13C109.5
C6—C5—H5A109.4H13A—C13—H13C109.5
C4—C5—H5A109.4H13B—C13—H13C109.5
C6—C5—H5B109.4C7—C14—H14A109.5
C4—C5—H5B109.4C7—C14—H14B109.5
H5A—C5—H5B108.0H14A—C14—H14B109.5
C5—C6—C7119.2 (5)C7—C14—H14C109.5
C5—C6—H6A107.5H14A—C14—H14C109.5
C7—C6—H6A107.5H14B—C14—H14C109.5
C5—C6—H6B107.5C7—C15—H15A109.5
C7—C6—H6B107.5C7—C15—H15B109.5
H6A—C6—H6B107.0H15A—C15—H15B109.5
C15—C7—C14108.4 (5)C7—C15—H15C109.5
C15—C7—C6111.6 (5)H15A—C15—H15C109.5
C14—C7—C6103.8 (4)H15B—C15—H15C109.5
C15—C7—C8114.9 (4)C10—C16—Br2112.2 (3)
C14—C7—C8107.6 (4)C10—C16—H16A109.2
C6—C7—C8110.0 (4)Br2—C16—H16A109.2
C9—C8—C1109.4 (3)C10—C16—H16B109.2
C9—C8—C7112.0 (3)Br2—C16—H16B109.2
C1—C8—C7116.2 (3)H16A—C16—H16B107.9
  5 in total

1.  Screening study for potential lead compounds for natural product-based fungicides: I. Synthesis and in vitro evaluation of coumarins against Botrytis cinerea.

Authors:  Mourad Daoubi; Rosa Durán-Patrón; Mohamed Hmamouchi; Rosario Hernández-Galán; Ahmed Benharref; Isidro G Collado
Journal:  Pest Manag Sci       Date:  2004-09       Impact factor: 4.845

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  (1S,3R,8R,9R,10S)-2,2-Dibromo-3,7,7,10-tetra-methyl-9β,10β-ep-oxy-3,7,7,10-tetra-methyl-tricyclo-[6.4.0.0(1,3)]dodeca-ne.

Authors:  Abdelouahd Oukhrib; Ahmed Benharref; Mohamed Saadi; Moha Berraho; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-09

4.  (1S,3R,8R,9S,11R)-2,2,10,10-Tetra-chloro-3,7,7,11-tetra-methyl-tetra-cyclo-[6.5.0.0(1,3).0(9,11)]trideca-ne.

Authors:  Najia Ourhriss; Ahmed Benharref; Mohamed Saadi; Lahcen El Ammari; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-23

5.  (1S,2R,7R,8S,10R)-9,9-Di-bromo-2,6,6,10-tetra-methyl-1α,2α-ep-oxy-tri-cyclo-[5.5.0.0(8,10)]dodeca-ne.

Authors:  Ahmed Benharref; Jamal El Karroumi; Lahcen El Ammari; Mohamed Saadi; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-08
  5 in total

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