Literature DB >> 21589429

(1S,3R,8S,9R,10S)-2,2-Dichloro-3,7,7,10-tetra-methyl-9,10-ep-oxy-tricyclo-[6.4.0.0]dodeca-ne.

Ahmed Benharref, Lahcen El Ammari, Daniel Avignant, Abdelghani Oudahmane, Moha Berraho.   

Abstract

The title compound, C(16)H(24)Cl(2)O, was synthesized from β-himachalene (3,5,5,9-tetra-methyl-2,4a,5,6,7,8-hexa-hydro-1H-benzocyclo-heptene), which was isolated from the essential oil of the Atlas cedar (cedrus atlantica). The mol-ecule forms an extended sheet of two fused rings which exhibit different conformations. The six-membered ring has a half-chair conformation, while the seven-membered ring displays a chair conformation; the dihedral angle between the two rings is 38.2 (1)°.

Entities:  

Year:  2010        PMID: 21589429      PMCID: PMC3011603          DOI: 10.1107/S1600536810045344

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isolation of β-himachalene, see: Joseph & Dev (1968 ▶); Plattier & Teiseire (1974 ▶). For the reactivity of this sesquiterpene, see: Lassaba et al. (1998 ▶); Chekroun et al. (2000 ▶); El Jamili et al. (2002 ▶); Sbai et al. (2002 ▶); Dakir et al. (2004 ▶). For its biological activity, see: Daoubi et al. (2004 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C16H24Cl2O M = 303.24 Orthorhombic, a = 8.4995 (3) Å b = 10.2461 (4) Å c = 18.1656 (6) Å V = 1581.98 (10) Å3 Z = 4 Mo Kα radiation μ = 0.40 mm−1 T = 298 K 0.67 × 0.41 × 0.26 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008) ▶ T min = 0.609, T max = 0.745 7171 measured reflections 3369 independent reflections 2830 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.106 S = 1.01 3369 reflections 177 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.29 e Å−3 Absolute structure: Flack & Bernardinelli (2000 ▶), 1423 Friedel pairs Flack parameter: 0.04 (7) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810045344/im2241sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810045344/im2241Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H24Cl2OF(000) = 648
Mr = 303.24Dx = 1.273 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3372 reflections
a = 8.4995 (3) Åθ = 2.3–26.9°
b = 10.2461 (4) ŵ = 0.40 mm1
c = 18.1656 (6) ÅT = 298 K
V = 1581.98 (10) Å3Prism, colourless
Z = 40.67 × 0.41 × 0.26 mm
Bruker APEXII CCD diffractometer3369 independent reflections
Radiation source: fine-focus sealed tube2830 reflections with I > 2σ(I)
graphiteRint = 0.025
Detector resolution: 8.3333 pixels mm-1θmax = 26.9°, θmin = 2.3°
ω and φ scansh = −9→10
Absorption correction: multi-scan (SADABS; Bruker, 2008)k = −13→10
Tmin = 0.609, Tmax = 0.745l = −16→22
7171 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.040w = 1/[σ2(Fo2) + (0.0568P)2 + 0.1767P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.106(Δ/σ)max < 0.001
S = 1.01Δρmax = 0.22 e Å3
3369 reflectionsΔρmin = −0.29 e Å3
177 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.073 (4)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack & Bernardinelli (2000), 1423 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.04 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.6413 (2)0.5366 (2)0.38517 (10)0.0356 (4)
C20.5713 (3)0.5121 (2)0.46043 (13)0.0457 (5)
C30.6259 (3)0.3964 (2)0.41628 (12)0.0460 (5)
C40.7701 (3)0.3249 (3)0.44259 (15)0.0630 (7)
H4A0.73750.24450.46630.076*
H4B0.82300.37800.47920.076*
C50.8864 (3)0.2922 (3)0.38160 (18)0.0675 (8)
H5A0.94960.21800.39670.081*
H5B0.82850.26710.33780.081*
C60.9941 (3)0.4052 (3)0.36304 (16)0.0622 (7)
H6A1.07590.37200.33080.075*
H6B1.04510.43220.40830.075*
C70.9253 (3)0.5290 (2)0.32646 (13)0.0464 (5)
C80.8050 (2)0.59920 (19)0.37903 (11)0.0359 (4)
H80.85090.59360.42840.043*
C90.7899 (3)0.7442 (2)0.36270 (12)0.0417 (5)
H90.86870.79900.38710.050*
C100.6401 (3)0.8106 (2)0.34700 (12)0.0472 (5)
C110.4936 (3)0.7314 (2)0.34176 (14)0.0513 (6)
H11A0.42930.76500.30190.062*
H11B0.43440.74080.38710.062*
C120.5260 (3)0.5877 (2)0.32837 (12)0.0438 (5)
H12A0.42840.53890.33140.053*
H12B0.56920.57600.27940.053*
C130.5035 (4)0.3054 (3)0.38394 (17)0.0677 (8)
H13A0.47470.24110.41990.102*
H13B0.54620.26270.34130.102*
H13C0.41210.35470.37010.102*
C141.0652 (3)0.6208 (3)0.31365 (18)0.0665 (8)
H14A1.14440.57640.28550.100*
H14B1.10830.64690.36020.100*
H14C1.03030.69660.28720.100*
C150.8565 (3)0.4933 (3)0.25117 (13)0.0575 (6)
H15A0.81990.57100.22710.086*
H15B0.77020.43400.25770.086*
H15C0.93620.45270.22160.086*
C160.6208 (4)0.9531 (3)0.36539 (17)0.0711 (8)
H16A0.72090.99610.36190.107*
H16B0.58090.96170.41460.107*
H16C0.54840.99240.33140.107*
O0.7511 (2)0.78441 (15)0.28799 (9)0.0529 (4)
Cl10.66972 (9)0.56107 (8)0.54165 (3)0.0691 (2)
Cl20.36713 (8)0.53272 (8)0.47590 (4)0.0698 (2)
U11U22U33U12U13U23
C10.0372 (10)0.0357 (10)0.0339 (9)0.0002 (9)0.0019 (9)−0.0013 (8)
C20.0485 (11)0.0517 (13)0.0369 (11)−0.0012 (10)0.0050 (10)0.0004 (10)
C30.0565 (13)0.0393 (12)0.0423 (11)−0.0039 (10)0.0074 (11)0.0030 (9)
C40.0839 (18)0.0461 (14)0.0591 (16)0.0145 (13)0.0087 (14)0.0109 (12)
C50.0754 (18)0.0448 (14)0.0822 (19)0.0203 (13)0.0098 (16)0.0030 (13)
C60.0529 (15)0.0563 (16)0.0774 (17)0.0187 (12)0.0092 (14)−0.0024 (13)
C70.0389 (11)0.0482 (13)0.0521 (12)0.0031 (10)0.0054 (10)−0.0031 (11)
C80.0356 (10)0.0379 (11)0.0342 (10)−0.0006 (9)−0.0059 (9)−0.0004 (8)
C90.0470 (12)0.0384 (11)0.0396 (11)−0.0050 (9)−0.0071 (10)−0.0009 (9)
C100.0595 (14)0.0389 (12)0.0432 (11)0.0053 (10)−0.0069 (11)0.0019 (9)
C110.0449 (13)0.0572 (15)0.0517 (14)0.0121 (11)−0.0082 (11)0.0051 (11)
C120.0353 (11)0.0537 (13)0.0424 (11)−0.0042 (10)−0.0034 (9)−0.0007 (10)
C130.081 (2)0.0477 (14)0.0743 (18)−0.0225 (13)0.0173 (16)−0.0033 (13)
C140.0397 (13)0.0759 (19)0.084 (2)−0.0028 (12)0.0119 (14)0.0010 (15)
C150.0643 (15)0.0617 (15)0.0467 (13)0.0046 (13)0.0106 (12)−0.0106 (11)
C160.095 (2)0.0450 (14)0.0737 (17)0.0165 (14)−0.0216 (17)0.0008 (13)
O0.0632 (11)0.0497 (10)0.0458 (9)−0.0048 (8)−0.0006 (8)0.0107 (8)
Cl10.0888 (5)0.0842 (5)0.0342 (3)0.0068 (4)−0.0030 (3)−0.0063 (3)
Cl20.0547 (4)0.0862 (5)0.0683 (4)−0.0017 (3)0.0248 (3)0.0005 (4)
C1—C21.512 (3)C9—O1.456 (3)
C1—C121.517 (3)C9—C101.472 (3)
C1—C81.536 (3)C9—H90.9800
C1—C31.550 (3)C10—O1.453 (3)
C2—C31.505 (3)C10—C111.489 (3)
C2—Cl11.769 (2)C10—C161.507 (3)
C2—Cl21.770 (2)C11—C121.517 (3)
C3—C41.506 (3)C11—H11A0.9700
C3—C131.516 (4)C11—H11B0.9700
C4—C51.522 (4)C12—H12A0.9700
C4—H4A0.9700C12—H12B0.9700
C4—H4B0.9700C13—H13A0.9600
C5—C61.515 (4)C13—H13B0.9600
C5—H5A0.9700C13—H13C0.9600
C5—H5B0.9700C14—H14A0.9600
C6—C71.546 (3)C14—H14B0.9600
C6—H6A0.9700C14—H14C0.9600
C6—H6B0.9700C15—H15A0.9600
C7—C151.532 (3)C15—H15B0.9600
C7—C141.534 (4)C15—H15C0.9600
C7—C81.574 (3)C16—H16A0.9600
C8—C91.521 (3)C16—H16B0.9600
C8—H80.9800C16—H16C0.9600
C2—C1—C12114.70 (17)O—C9—C8118.51 (17)
C2—C1—C8119.45 (17)C10—C9—C8124.23 (19)
C12—C1—C8113.09 (17)O—C9—H9114.5
C2—C1—C358.86 (14)C10—C9—H9114.5
C12—C1—C3120.89 (19)C8—C9—H9114.5
C8—C1—C3119.35 (18)O—C10—C959.71 (14)
C3—C2—C161.81 (14)O—C10—C11113.26 (19)
C3—C2—Cl1121.47 (17)C9—C10—C11118.93 (18)
C1—C2—Cl1121.38 (16)O—C10—C16114.4 (2)
C3—C2—Cl2118.75 (17)C9—C10—C16120.0 (2)
C1—C2—Cl2120.64 (16)C11—C10—C16116.8 (2)
Cl1—C2—Cl2107.30 (12)C10—C11—C12112.81 (18)
C2—C3—C4117.7 (2)C10—C11—H11A109.0
C2—C3—C13118.7 (2)C12—C11—H11A109.0
C4—C3—C13112.5 (2)C10—C11—H11B109.0
C2—C3—C159.33 (14)C12—C11—H11B109.0
C4—C3—C1119.9 (2)H11A—C11—H11B107.8
C13—C3—C1119.2 (2)C1—C12—C11110.06 (18)
C3—C4—C5113.9 (2)C1—C12—H12A109.6
C3—C4—H4A108.8C11—C12—H12A109.6
C5—C4—H4A108.8C1—C12—H12B109.6
C3—C4—H4B108.8C11—C12—H12B109.6
C5—C4—H4B108.8H12A—C12—H12B108.2
H4A—C4—H4B107.7C3—C13—H13A109.5
C6—C5—C4112.7 (2)C3—C13—H13B109.5
C6—C5—H5A109.0H13A—C13—H13B109.5
C4—C5—H5A109.0C3—C13—H13C109.5
C6—C5—H5B109.0H13A—C13—H13C109.5
C4—C5—H5B109.0H13B—C13—H13C109.5
H5A—C5—H5B107.8C7—C14—H14A109.5
C5—C6—C7119.6 (2)C7—C14—H14B109.5
C5—C6—H6A107.4H14A—C14—H14B109.5
C7—C6—H6A107.4C7—C14—H14C109.5
C5—C6—H6B107.4H14A—C14—H14C109.5
C7—C6—H6B107.4H14B—C14—H14C109.5
H6A—C6—H6B107.0C7—C15—H15A109.5
C15—C7—C14107.9 (2)C7—C15—H15B109.5
C15—C7—C6109.4 (2)H15A—C15—H15B109.5
C14—C7—C6106.0 (2)C7—C15—H15C109.5
C15—C7—C8113.74 (18)H15A—C15—H15C109.5
C14—C7—C8108.4 (2)H15B—C15—H15C109.5
C6—C7—C8111.10 (19)C10—C16—H16A109.5
C9—C8—C1110.22 (17)C10—C16—H16B109.5
C9—C8—C7112.54 (18)H16A—C16—H16B109.5
C1—C8—C7116.23 (17)C10—C16—H16C109.5
C9—C8—H8105.6H16A—C16—H16C109.5
C1—C8—H8105.6H16B—C16—H16C109.5
C7—C8—H8105.6C10—O—C960.78 (14)
O—C9—C1059.51 (14)
  4 in total

1.  Regio- and stereoselectivity of beta-himachalene epoxidation by m-CPBA. A theoretical study.

Authors:  A Chekroun; A Jarid; A Benharref; A Boutalib
Journal:  J Org Chem       Date:  2000-07-14       Impact factor: 4.354

2.  Screening study for potential lead compounds for natural product-based fungicides: I. Synthesis and in vitro evaluation of coumarins against Botrytis cinerea.

Authors:  Mourad Daoubi; Rosa Durán-Patrón; Mohamed Hmamouchi; Rosario Hernández-Galán; Ahmed Benharref; Isidro G Collado
Journal:  Pest Manag Sci       Date:  2004-09       Impact factor: 4.845

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  (1S,3R,8S,9S,10R)-2,2-Dichloro-9,10-epoxy-3,7,7,10-tetramethyltricyclo[6.4.0.0(1,3)]dodecane and (1S,3R,8S,10R)-2,2-dichloro-3,7,7,10-tetramethyltricyclo[6.4.0.0(1,3)]dodecan-9-one.

Authors:  F Sbai; M Dakir; A Auhmani; H El Jamili; M Akssira; A Benharref; A Kenz; M Pierrot
Journal:  Acta Crystallogr C       Date:  2002-07-31       Impact factor: 1.172

  4 in total
  4 in total

1.  Crystal structure of (1R,2S,4R,7R,8S,9R)-3,3-dichloro-8,9-epoxy-4,8,12,12-tetramethyltricyclo[5.5.0.0(2,4)]dodecane.

Authors:  Ahmed Benzalim; Aziz Auhmani; My Youssef Ait Itto; Jean-Claude Daran; Abdelwahed Auhmani
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-07-04

2.  (1S,3R,8R,9R,10S)-2,2-Dibromo-3,7,7,10-tetra-methyl-9β,10β-ep-oxy-3,7,7,10-tetra-methyl-tricyclo-[6.4.0.0(1,3)]dodeca-ne.

Authors:  Abdelouahd Oukhrib; Ahmed Benharref; Mohamed Saadi; Moha Berraho; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-09

3.  2,2-Dichloro-3,7,7,11-tetra-methyl-10-aza-tetra-cyclo-[6.5.0.0(1,3).0(9,11)]trideca-ne.

Authors:  Abdelouahd Oukhrib; Ahmed Benharref; Mohamed Saadi; Moha Berraho; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-28

4.  (1S,3S,8R,9S,10R)-9,10-Ep-oxy-3,7,7,10-tetra-methyl-tri-cyclo-[6.4.0.0(1,3)]dodeca-ne.

Authors:  Abdoullah Bimoussa; Aziz Auhmani; My Youssef Ait Itto; Jean-Claude Daran; Abdelwahed Auhmani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-26
  4 in total

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