Literature DB >> 24454223

(1S,3R,8R,10R)-2,2-Di-bromo-3,7,7,10-tetra-methyl-tri-cyclo-[6.4.0.0(1,3)]dodecan-9-one.

Ahmed Benharref1, Noureddine Mazoir1, Jean-Claude Daran2, Moha Berraho1.   

Abstract

The title compound, C16H24Br2O was synthesized by three steps from β-himachalene (3,5,5,9-tetra-methyl-2,4a,5,6,7,8-hexa-hydro-1H-benzo-cyclo-heptene), which was isolated from essential oil of the Atlas cedar (Cedrus atlantica). The mol-ecule is built up from a seven-membered ring to which a six- and a three-membered ring are fused. The six-membered ring shows a chair conformation. One C atom in the seven-membered ring and two methyl groups attached to the ring are disordered over two sets of sites, with an occupancy ratio of 0.658 (7):0.342 (7).

Entities:  

Year:  2013        PMID: 24454223      PMCID: PMC3885047          DOI: 10.1107/S1600536813030936

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the reactivity and biological properties of β-himachalene, see: El Haib et al. (2011 ▶); El Jamili et al. (2002 ▶). For related structures, see: Benharref et al. (2013 ▶); Oukhrib et al. (2013 ▶); Ourhriss et al. (2013 ▶). For conformational analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C16H24Br2O M = 392.17 Monoclinic, a = 6.5975 (2) Å b = 15.2612 (3) Å c = 8.2688 (2) Å β = 100.045 (3)° V = 819.79 (4) Å3 Z = 2 Cu Kα radiation μ = 6.19 mm−1 T = 180 K 0.5 × 0.03 × 0.03 mm

Data collection

Agilent Xcalibur (Eos, Gemini ultra) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013 ▶) T min = 0.269, T max = 1.000 6201 measured reflections 2416 independent reflections 2399 reflections with I > 2σ(I) R int = 0.021 θmax = 60.5°

Refinement

R[F 2 > 2σ(F 2)] = 0.022 wR(F 2) = 0.057 S = 1.07 2416 reflections 206 parameters 13 restraints H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.46 e Å−3 Absolute structure: Flack & Bernardinelli (2000 ▶), 1127 Friedel pairs Absolute structure parameter: 0.01 (2) Data collection: CrysAlis PRO (Agilent, 2013 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813030936/bt6944sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813030936/bt6944Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813030936/bt6944Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H24Br2OF(000) = 396
Mr = 392.17Dx = 1.589 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.54184 Å
a = 6.5975 (2) ÅCell parameters from 5144 reflections
b = 15.2612 (3) Åθ = 5.4–60.5°
c = 8.2688 (2) ŵ = 6.19 mm1
β = 100.045 (3)°T = 180 K
V = 819.79 (4) Å3Box, colourless
Z = 20.5 × 0.03 × 0.03 mm
Agilent Xcalibur (Eos, Gemini ultra) diffractometer2416 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source2399 reflections with I > 2σ(I)
Miror monochromatorRint = 0.021
Detector resolution: 16.1978 pixels mm-1θmax = 60.5°, θmin = 5.4°
ω scansh = −7→6
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013)k = −17→17
Tmin = 0.269, Tmax = 1.000l = −9→9
6201 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.022H-atom parameters constrained
wR(F2) = 0.057w = 1/[σ2(Fo2) + (0.0402P)2 + 0.1798P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.001
2416 reflectionsΔρmax = 0.28 e Å3
206 parametersΔρmin = −0.46 e Å3
13 restraintsAbsolute structure: Flack & Bernardinelli (2000), 1127 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.01 (2)
Experimental. 'Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. CrysAlisPro (Agilent Technologies, 2013 )
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Br10.99187 (4)0.122716 (16)0.78691 (3)0.03410 (11)
Br20.52030 (5)0.08850 (2)0.71788 (4)0.04828 (14)
C10.7175 (4)0.19420 (18)1.0114 (3)0.0248 (5)
C20.7326 (4)0.1623 (2)0.8397 (3)0.0291 (6)
C30.6907 (5)0.2575 (2)0.8643 (3)0.0326 (7)
C40.8580 (6)0.3239 (2)0.8543 (4)0.0410 (8)
H4A0.82830.35340.74610.049*
H4B0.99090.29280.86110.049*
C50.8797 (7)0.3936 (2)0.9896 (4)0.0503 (9)
H5A0.74200.40811.01430.060*0.658 (7)
H5B0.93910.44760.95090.060*0.658 (7)
H5C1.02600.41151.01570.060*0.342 (7)
H5D0.79900.44570.94570.060*0.342 (7)
C61.0237 (8)0.3596 (3)1.1520 (6)0.0392 (15)0.658 (7)
H6A1.15450.33921.12180.047*0.658 (7)
H6B1.05680.41021.22690.047*0.658 (7)
C70.9428 (5)0.2883 (2)1.2449 (4)0.0328 (7)
C140.7534 (9)0.3152 (3)1.3157 (8)0.0413 (14)0.658 (7)
H14A0.78380.36871.38090.062*0.658 (7)
H14B0.71660.26821.38580.062*0.658 (7)
H14C0.63830.32611.22580.062*0.658 (7)
C151.1166 (8)0.2667 (3)1.3978 (6)0.0365 (13)0.658 (7)
H15A1.23570.24101.35930.055*0.658 (7)
H15B1.06300.22501.47010.055*0.658 (7)
H15C1.15840.32071.45850.055*0.658 (7)
C14A1.1692 (14)0.3197 (7)1.2660 (14)0.045 (3)0.342 (7)
H14D1.18230.37681.32100.067*0.342 (7)
H14E1.20960.32501.15790.067*0.342 (7)
H14F1.25880.27721.33250.067*0.342 (7)
C15A0.866 (2)0.2882 (7)1.4049 (13)0.044 (3)0.342 (7)
H15D0.94780.24711.48080.065*0.342 (7)
H15E0.72130.27021.38640.065*0.342 (7)
H15F0.87870.34721.45210.065*0.342 (7)
C6A0.8140 (16)0.3676 (5)1.1417 (10)0.039 (3)0.342 (7)
H6A10.66760.34991.11540.047*0.342 (7)
H6A20.82190.41961.21400.047*0.342 (7)
C80.9178 (4)0.20156 (19)1.1383 (3)0.0246 (6)
H81.03210.20261.07310.030*
C90.9510 (5)0.1190 (2)1.2426 (4)0.0317 (6)
C100.7707 (5)0.07818 (19)1.3066 (4)0.0325 (6)
H100.73330.11861.39190.039*
C110.5854 (5)0.0733 (2)1.1673 (4)0.0360 (7)
H11A0.61470.03051.08440.043*
H11B0.46450.05191.21170.043*
C120.5341 (4)0.1611 (2)1.0847 (4)0.0324 (6)
H12A0.50060.20401.16600.039*
H12B0.41230.15500.99670.039*
C1010.8255 (6)−0.0096 (2)1.3886 (4)0.0468 (9)
H10A0.8667−0.05041.30890.070*
H10B0.7056−0.03311.42930.070*
H10C0.9396−0.00191.48080.070*
C3110.4754 (6)0.2933 (3)0.7987 (5)0.0508 (10)
H31A0.46630.30990.68320.076*
H31B0.44960.34480.86280.076*
H31C0.37260.24810.80810.076*
O11.1188 (4)0.08460 (19)1.2698 (4)0.0608 (8)
U11U22U33U12U13U23
Br10.03127 (18)0.04181 (18)0.03046 (17)−0.00328 (14)0.00880 (13)−0.00787 (14)
Br20.0335 (2)0.0641 (3)0.0454 (2)−0.01004 (16)0.00180 (17)−0.02435 (18)
C10.0237 (14)0.0255 (12)0.0249 (13)0.0003 (12)0.0029 (11)0.0001 (11)
C20.0238 (13)0.0362 (14)0.0263 (12)−0.0054 (13)0.0016 (11)−0.0060 (12)
C30.0347 (16)0.0360 (15)0.0258 (13)0.0046 (13)0.0011 (12)0.0022 (12)
C40.060 (2)0.0321 (16)0.0289 (15)−0.0066 (15)0.0024 (15)0.0089 (13)
C50.077 (3)0.0221 (15)0.052 (2)−0.0032 (16)0.0115 (19)0.0029 (14)
C60.057 (4)0.023 (2)0.035 (3)−0.011 (2)0.000 (2)−0.005 (2)
C70.0376 (16)0.0305 (16)0.0301 (14)−0.0034 (13)0.0056 (14)−0.0104 (13)
C140.053 (3)0.029 (2)0.042 (3)0.001 (3)0.010 (3)−0.015 (2)
C150.044 (3)0.029 (2)0.032 (2)−0.003 (2)−0.006 (2)−0.0076 (19)
C14A0.038 (6)0.045 (5)0.052 (6)−0.010 (5)0.008 (5)−0.019 (5)
C15A0.067 (8)0.030 (5)0.037 (6)−0.008 (5)0.020 (6)−0.015 (4)
C6A0.052 (7)0.024 (4)0.045 (5)0.002 (4)0.016 (4)−0.004 (4)
C80.0238 (14)0.0258 (13)0.0247 (13)−0.0026 (12)0.0053 (11)−0.0044 (11)
C90.0354 (16)0.0320 (14)0.0267 (12)0.0054 (16)0.0027 (12)−0.0014 (15)
C100.0455 (18)0.0254 (13)0.0297 (14)0.0012 (14)0.0152 (13)0.0005 (11)
C110.0316 (15)0.0377 (17)0.0417 (16)−0.0064 (14)0.0149 (13)−0.0003 (14)
C120.0224 (14)0.0378 (14)0.0379 (14)−0.0011 (13)0.0081 (12)−0.0046 (14)
C1010.070 (3)0.0292 (16)0.0422 (18)0.0018 (16)0.0138 (17)0.0041 (14)
C3110.048 (2)0.050 (2)0.049 (2)0.0172 (16)−0.0070 (18)0.0059 (15)
O10.0390 (13)0.0750 (18)0.0715 (17)0.0250 (14)0.0177 (12)0.0388 (15)
Br1—C21.934 (3)C15—H15A0.9800
Br2—C21.938 (3)C15—H15B0.9800
C1—C21.521 (4)C15—H15C0.9800
C1—C121.530 (4)C14A—H14D0.9800
C1—C31.539 (4)C14A—H14E0.9800
C1—C81.542 (4)C14A—H14F0.9800
C2—C31.499 (4)C15A—H15D0.9800
C3—C41.512 (5)C15A—H15E0.9800
C3—C3111.530 (4)C15A—H15F0.9800
C4—C51.533 (5)C6A—H6A10.9900
C4—H4A0.9900C6A—H6A20.9900
C4—H4B0.9900C8—C91.521 (4)
C5—C6A1.455 (9)C8—H81.0000
C5—C61.590 (6)C9—O11.210 (4)
C5—H5A0.9900C9—C101.517 (4)
C5—H5B0.9900C10—C1011.516 (4)
C5—H5C0.9900C10—C111.528 (4)
C5—H5D0.9900C10—H101.0000
C6—C71.484 (6)C11—C121.515 (5)
C6—H6A0.9900C11—H11A0.9900
C6—H6B0.9900C11—H11B0.9900
C7—C15A1.496 (9)C12—H12A0.9900
C7—C141.525 (6)C12—H12B0.9900
C7—C14A1.549 (9)C101—H10A0.9800
C7—C81.583 (4)C101—H10B0.9800
C7—C151.586 (5)C101—H10C0.9800
C7—C6A1.632 (8)C311—H31A0.9800
C14—H14A0.9800C311—H31B0.9800
C14—H14B0.9800C311—H31C0.9800
C14—H14C0.9800
C2—C1—C12116.7 (2)C14—C7—C6A67.3 (4)
C2—C1—C358.67 (19)C14A—C7—C6A103.5 (6)
C12—C1—C3122.0 (2)C8—C7—C6A109.6 (4)
C2—C1—C8118.1 (2)C15—C7—C6A144.0 (4)
C12—C1—C8113.4 (2)C7—C14—H14A109.5
C3—C1—C8117.3 (2)C7—C14—H14B109.5
C3—C2—C161.27 (19)C7—C14—H14C109.5
C3—C2—Br1121.7 (2)C7—C15—H15A109.5
C1—C2—Br1121.02 (19)C7—C15—H15B109.5
C3—C2—Br2120.0 (2)C7—C15—H15C109.5
C1—C2—Br2120.8 (2)C7—C14A—H14D109.5
Br1—C2—Br2106.78 (14)C7—C14A—H14E109.5
C2—C3—C4119.2 (3)H14D—C14A—H14E109.5
C2—C3—C311118.7 (3)C7—C14A—H14F109.5
C4—C3—C311112.5 (3)H14D—C14A—H14F109.5
C2—C3—C160.06 (19)H14E—C14A—H14F109.5
C4—C3—C1118.7 (2)C7—C15A—H15D109.5
C311—C3—C1118.4 (3)C7—C15A—H15E109.5
C3—C4—C5113.7 (3)H15D—C15A—H15E109.5
C3—C4—H4A108.8C7—C15A—H15F109.5
C5—C4—H4A108.8H15D—C15A—H15F109.5
C3—C4—H4B108.8H15E—C15A—H15F109.5
C5—C4—H4B108.8C5—C6A—C7116.6 (6)
H4A—C4—H4B107.7C5—C6A—H6A1108.1
C6A—C5—C4116.0 (4)C7—C6A—H6A1108.1
C6A—C5—C653.5 (5)C5—C6A—H6A2108.1
C4—C5—C6110.9 (3)C7—C6A—H6A2108.1
C6A—C5—H5A57.4H6A1—C6A—H6A2107.3
C4—C5—H5A109.5C9—C8—C1110.3 (2)
C6—C5—H5A109.5C9—C8—C7112.7 (2)
C6A—C5—H5B134.6C1—C8—C7115.7 (2)
C4—C5—H5B109.5C9—C8—H8105.8
C6—C5—H5B109.5C1—C8—H8105.8
H5A—C5—H5B108.1C7—C8—H8105.8
C6A—C5—H5C108.3O1—C9—C10120.3 (3)
C4—C5—H5C108.3O1—C9—C8120.1 (3)
C6—C5—H5C59.4C10—C9—C8119.6 (2)
H5A—C5—H5C142.0C101—C10—C9112.3 (3)
H5B—C5—H5C54.1C101—C10—C11113.0 (3)
C6A—C5—H5D108.3C9—C10—C11109.3 (2)
C4—C5—H5D108.3C101—C10—H10107.3
C6—C5—H5D140.8C9—C10—H10107.3
H5A—C5—H5D56.1C11—C10—H10107.3
H5B—C5—H5D55.3C12—C11—C10112.5 (3)
H5C—C5—H5D107.4C12—C11—H11A109.1
C7—C6—C5117.4 (4)C10—C11—H11A109.1
C7—C6—H6A107.9C12—C11—H11B109.1
C5—C6—H6A107.9C10—C11—H11B109.1
C7—C6—H6B107.9H11A—C11—H11B107.8
C5—C6—H6B107.9C11—C12—C1109.9 (2)
H6A—C6—H6B107.2C11—C12—H12A109.7
C6—C7—C15A131.7 (5)C1—C12—H12A109.7
C6—C7—C14113.1 (4)C11—C12—H12B109.7
C15A—C7—C1440.1 (5)C1—C12—H12B109.7
C6—C7—C14A53.5 (5)H12A—C12—H12B108.2
C15A—C7—C14A111.7 (7)C10—C101—H10A109.5
C14—C7—C14A135.3 (5)C10—C101—H10B109.5
C6—C7—C8109.7 (3)H10A—C101—H10B109.5
C15A—C7—C8118.2 (4)C10—C101—H10C109.5
C14—C7—C8115.3 (3)H10A—C101—H10C109.5
C14A—C7—C8109.0 (4)H10B—C101—H10C109.5
C6—C7—C15106.8 (3)C3—C311—H31A109.5
C15A—C7—C1566.7 (6)C3—C311—H31B109.5
C14—C7—C15106.1 (4)H31A—C311—H31B109.5
C14A—C7—C1555.0 (5)C3—C311—H31C109.5
C8—C7—C15105.1 (3)H31A—C311—H31C109.5
C6—C7—C6A52.2 (4)H31B—C311—H31C109.5
C15A—C7—C6A103.7 (6)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (1S,3S,8R,9S,11R)-10,10-Di-chloro-3,7,7,11-tetra-methyl-tetra-cyclo[6.5.0.0(1,3).0(9,11)]trideca-ne.

Authors:  Ahmed Benharref; Najia Ourhriss; Lahcen El Ammari; Mohamed Saadi; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-22

3.  (1S,3R,8R,9R,10S)-2,2-Dibromo-3,7,7,10-tetra-methyl-9β,10β-ep-oxy-3,7,7,10-tetra-methyl-tricyclo-[6.4.0.0(1,3)]dodeca-ne.

Authors:  Abdelouahd Oukhrib; Ahmed Benharref; Mohamed Saadi; Moha Berraho; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-09

4.  (1S,3R,8R,9S,11R)-2,2,10,10-Tetra-chloro-3,7,7,11-tetra-methyl-tetra-cyclo-[6.5.0.0(1,3).0(9,11)]trideca-ne.

Authors:  Najia Ourhriss; Ahmed Benharref; Mohamed Saadi; Lahcen El Ammari; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-23
  4 in total

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