Literature DB >> 26396785

Crystal structure of (1R,2S,4R,7R,8S,9R)-3,3-dichloro-8,9-epoxy-4,8,12,12-tetramethyltricyclo[5.5.0.0(2,4)]dodecane.

Ahmed Benzalim1, Aziz Auhmani1, My Youssef Ait Itto1, Jean-Claude Daran2, Abdelwahed Auhmani1.   

Abstract

The title compound, C16H24Cl2O, is built up from two fused six- and seven-membered rings which bear a di-chloro-cyclo-propane group and an ep-oxy group, respectively. In the mol-ecule, the six-membered ring adopts an envelope configuration with the C atom linking the ep-oxy ring at the flap, while the seven-membered ring adopts a boat-sofa conformation.

Entities:  

Keywords:  absolute configuration; crystal structure; epoxide; natural products

Year:  2015        PMID: 26396785      PMCID: PMC4571385          DOI: 10.1107/S205698901501244X

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For applications of epoxides, see: Qu et al. (2009 ▸); Taylor et al. (1991 ▸); Mori (1989 ▸); Paddon-Jones et al. (1997 ▸); Yang (2004 ▸); Vollhardt & Schore (1996 ▸); Trost et al. (1983 ▸). For related structures, see: Chiaroni et al. (1992 ▸, 1995 ▸, 1996a ▸,b ▸,c ▸); Sbai et al. (2002 ▸); Benharref et al. (2010 ▸); Oukhrib et al. (2013 ▸); Bimoussa et al. (2014 ▸). For puckering parameters and ring conformation, see: Boessenkool & Boeyens (1980 ▸).

Experimental

Crystal data

C16H24Cl2O M = 303.25 Monoclinic, a = 8.7706 (5) Å b = 10.5467 (4) Å c = 9.1639 (5) Å β = 115.710 (7)° V = 763.75 (8) Å3 Z = 2 Mo Kα radiation μ = 0.42 mm−1 T = 180 K 0.40 × 0.34 × 0.08 mm

Data collection

Agilent Xcalibur, Eos, Gemini ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014 ▸) T min = 0.901, T max = 1.000 7805 measured reflections 2945 independent reflections 2868 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.076 S = 1.05 2945 reflections 176 parameters 1 restraint H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: Flack x determined using 1242 quotients [(I +)−(I −)]/[(I +)+(I −)] (Parsons et al., 2013 ▸) Absolute structure parameter: −0.02 (2)

Data collection: CrysAlis PRO (Agilent, 2014 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015 ▸); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▸) and ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: SHELXL2013. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S205698901501244X/xu5855sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901501244X/xu5855Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S205698901501244X/xu5855Isup3.cml Click here for additional data file. . DOI: 10.1107/S205698901501244X/xu5855fig1.tif Displacement ellipsoid plot of the title compound. CCDC reference: 1409393 Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H24Cl2OF(000) = 324
Mr = 303.25Dx = 1.319 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
a = 8.7706 (5) ÅCell parameters from 4267 reflections
b = 10.5467 (4) Åθ = 4.3–29.3°
c = 9.1639 (5) ŵ = 0.42 mm1
β = 115.710 (7)°T = 180 K
V = 763.75 (8) Å3Box, colourless
Z = 20.40 × 0.34 × 0.08 mm
Agilent Xcalibur, Eos, Gemini ultra diffractometer2945 independent reflections
Radiation source: Enhance (Mo) X-ray Source2868 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
Detector resolution: 16.1978 pixels mm-1θmax = 26.4°, θmin = 3.2°
ω scansh = −10→10
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014)k = −13→12
Tmin = 0.901, Tmax = 1.000l = −11→11
7805 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.029w = 1/[σ2(Fo2) + (0.0453P)2 + 0.1659P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.076(Δ/σ)max < 0.001
S = 1.05Δρmax = 0.44 e Å3
2945 reflectionsΔρmin = −0.18 e Å3
176 parametersAbsolute structure: Flack x determined using 1242 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
1 restraintAbsolute structure parameter: −0.02 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.6765 (3)1.0011 (2)0.7612 (3)0.0150 (5)
H10.58110.94850.68320.018*
C20.7132 (3)1.0959 (2)0.6554 (3)0.0161 (5)
H20.71621.18660.68850.019*
C30.6463 (3)1.0746 (2)0.4760 (3)0.0184 (5)
C40.8324 (3)1.0632 (2)0.5788 (3)0.0183 (5)
C50.9157 (3)0.9334 (3)0.6122 (3)0.0238 (5)
H5A1.03990.94570.66410.029*
H5B0.88600.89090.50700.029*
C60.8699 (3)0.8432 (3)0.7196 (3)0.0222 (5)
H6A0.77390.78960.64800.027*
H6B0.96750.78630.77750.027*
C70.8220 (3)0.9058 (2)0.8456 (3)0.0175 (5)
H70.77060.83600.88320.021*
C80.9699 (3)0.9526 (3)0.9984 (3)0.0200 (5)
C90.9417 (3)0.9677 (3)1.1444 (3)0.0234 (6)
H91.01971.03021.22360.028*
C100.7742 (3)0.9537 (3)1.1534 (3)0.0266 (6)
H10A0.77221.01731.23190.032*
H10B0.77390.86921.20030.032*
C110.6069 (3)0.9666 (3)0.9990 (3)0.0230 (6)
H11A0.51670.98961.03170.028*
H11B0.57780.88250.94610.028*
C120.6043 (3)1.0642 (2)0.8722 (3)0.0189 (5)
C130.9439 (4)1.1678 (3)0.5645 (3)0.0287 (6)
H13A0.97461.14790.47620.043*
H13B1.04681.17480.66640.043*
H13C0.88231.24850.54160.043*
C141.1115 (3)1.0267 (3)0.9879 (3)0.0278 (6)
H14A1.19561.04871.09720.042*
H14B1.06611.10450.92550.042*
H14C1.16510.97520.93420.042*
C150.6951 (3)1.1861 (2)0.9559 (3)0.0222 (5)
H15A0.66001.25590.87740.033*
H15B0.81781.17400.99880.033*
H15C0.66581.20651.04490.033*
C160.4186 (3)1.0978 (3)0.7640 (3)0.0294 (6)
H16A0.35451.02000.71840.044*
H16B0.41251.15330.67600.044*
H16C0.37041.14150.82870.044*
O11.0269 (3)0.85597 (19)1.1245 (2)0.0275 (4)
Cl10.52452 (8)0.93841 (6)0.38605 (7)0.02818 (17)
Cl20.56482 (9)1.20376 (6)0.34222 (7)0.03117 (18)
U11U22U33U12U13U23
C10.0159 (11)0.0142 (11)0.0135 (10)−0.0016 (9)0.0052 (9)−0.0003 (9)
C20.0194 (12)0.0136 (12)0.0158 (11)0.0011 (10)0.0082 (9)0.0008 (9)
C30.0220 (12)0.0154 (11)0.0155 (11)0.0027 (10)0.0060 (9)0.0039 (9)
C40.0182 (12)0.0205 (12)0.0169 (11)0.0013 (10)0.0083 (9)0.0011 (9)
C50.0258 (12)0.0274 (14)0.0212 (11)0.0085 (12)0.0130 (9)0.0008 (12)
C60.0277 (14)0.0172 (12)0.0200 (11)0.0075 (11)0.0090 (10)0.0018 (9)
C70.0223 (12)0.0133 (12)0.0173 (11)0.0008 (9)0.0089 (10)0.0007 (9)
C80.0215 (12)0.0190 (12)0.0158 (10)0.0055 (11)0.0047 (9)0.0038 (10)
C90.0276 (13)0.0234 (14)0.0155 (11)0.0049 (11)0.0060 (10)0.0011 (10)
C100.0348 (14)0.0279 (14)0.0203 (11)0.0043 (13)0.0150 (11)0.0035 (11)
C110.0285 (13)0.0240 (14)0.0216 (11)−0.0017 (11)0.0158 (10)0.0012 (10)
C120.0198 (12)0.0208 (13)0.0183 (11)−0.0004 (10)0.0102 (9)−0.0002 (10)
C130.0301 (14)0.0327 (16)0.0284 (13)−0.0062 (13)0.0175 (11)−0.0007 (12)
C140.0215 (13)0.0320 (15)0.0251 (13)−0.0017 (12)0.0057 (11)0.0026 (12)
C150.0309 (13)0.0175 (13)0.0213 (11)0.0026 (11)0.0142 (10)−0.0009 (11)
C160.0222 (14)0.0384 (16)0.0296 (13)0.0054 (13)0.0132 (11)0.0021 (13)
O10.0334 (11)0.0271 (11)0.0197 (9)0.0117 (9)0.0094 (8)0.0075 (8)
Cl10.0305 (3)0.0301 (3)0.0191 (3)−0.0081 (3)0.0062 (2)−0.0044 (3)
Cl20.0418 (4)0.0283 (3)0.0250 (3)0.0152 (3)0.0159 (3)0.0122 (3)
C1—C21.521 (3)C9—O11.449 (3)
C1—C71.542 (3)C9—C101.513 (4)
C1—C121.561 (3)C9—H91.0000
C1—H11.0000C10—C111.540 (4)
C2—C31.503 (3)C10—H10A0.9900
C2—C41.530 (3)C10—H10B0.9900
C2—H21.0000C11—C121.545 (3)
C3—C41.494 (4)C11—H11A0.9900
C3—Cl21.764 (2)C11—H11B0.9900
C3—Cl11.766 (3)C12—C151.532 (4)
C4—C131.517 (4)C12—C161.536 (4)
C4—C51.519 (4)C13—H13A0.9800
C5—C61.542 (4)C13—H13B0.9800
C5—H5A0.9900C13—H13C0.9800
C5—H5B0.9900C14—H14A0.9800
C6—C71.538 (3)C14—H14B0.9800
C6—H6A0.9900C14—H14C0.9800
C6—H6B0.9900C15—H15A0.9800
C7—C81.520 (3)C15—H15B0.9800
C7—H71.0000C15—H15C0.9800
C8—O11.457 (3)C16—H16A0.9800
C8—C91.471 (3)C16—H16B0.9800
C8—C141.505 (4)C16—H16C0.9800
C2—C1—C7112.96 (19)O1—C9—C10119.6 (2)
C2—C1—C12113.1 (2)C8—C9—C10126.1 (2)
C7—C1—C12115.62 (19)O1—C9—H9113.6
C2—C1—H1104.6C8—C9—H9113.6
C7—C1—H1104.6C10—C9—H9113.6
C12—C1—H1104.6C9—C10—C11120.1 (2)
C3—C2—C1120.6 (2)C9—C10—H10A107.3
C3—C2—C459.00 (16)C11—C10—H10A107.3
C1—C2—C4121.3 (2)C9—C10—H10B107.3
C3—C2—H2114.9C11—C10—H10B107.3
C1—C2—H2114.9H10A—C10—H10B106.9
C4—C2—H2114.9C10—C11—C12116.6 (2)
C4—C3—C261.39 (16)C10—C11—H11A108.2
C4—C3—Cl2120.18 (19)C12—C11—H11A108.2
C2—C3—Cl2119.53 (18)C10—C11—H11B108.2
C4—C3—Cl1120.21 (18)C12—C11—H11B108.2
C2—C3—Cl1120.14 (18)H11A—C11—H11B107.3
Cl2—C3—Cl1108.85 (13)C15—C12—C16107.7 (2)
C3—C4—C13117.1 (2)C15—C12—C11110.4 (2)
C3—C4—C5119.9 (2)C16—C12—C11107.7 (2)
C13—C4—C5113.6 (2)C15—C12—C1114.5 (2)
C3—C4—C259.62 (16)C16—C12—C1107.1 (2)
C13—C4—C2118.0 (2)C11—C12—C1109.2 (2)
C5—C4—C2118.4 (2)C4—C13—H13A109.5
C4—C5—C6116.7 (2)C4—C13—H13B109.5
C4—C5—H5A108.1H13A—C13—H13B109.5
C6—C5—H5A108.1C4—C13—H13C109.5
C4—C5—H5B108.1H13A—C13—H13C109.5
C6—C5—H5B108.1H13B—C13—H13C109.5
H5A—C5—H5B107.3C8—C14—H14A109.5
C7—C6—C5116.5 (2)C8—C14—H14B109.5
C7—C6—H6A108.2H14A—C14—H14B109.5
C5—C6—H6A108.2C8—C14—H14C109.5
C7—C6—H6B108.2H14A—C14—H14C109.5
C5—C6—H6B108.2H14B—C14—H14C109.5
H6A—C6—H6B107.3C12—C15—H15A109.5
C8—C7—C6115.4 (2)C12—C15—H15B109.5
C8—C7—C1116.08 (19)H15A—C15—H15B109.5
C6—C7—C1109.83 (19)C12—C15—H15C109.5
C8—C7—H7104.7H15A—C15—H15C109.5
C6—C7—H7104.7H15B—C15—H15C109.5
C1—C7—H7104.7C12—C16—H16A109.5
O1—C8—C959.31 (15)C12—C16—H16B109.5
O1—C8—C14113.9 (2)H16A—C16—H16B109.5
C9—C8—C14118.1 (2)C12—C16—H16C109.5
O1—C8—C7111.4 (2)H16A—C16—H16C109.5
C9—C8—C7117.4 (2)H16B—C16—H16C109.5
C14—C8—C7120.5 (2)C9—O1—C860.82 (15)
O1—C9—C859.88 (15)
  8 in total

1.  Ketone-catalyzed asymmetric epoxidation reactions.

Authors:  Dan Yang
Journal:  Acc Chem Res       Date:  2004-08       Impact factor: 22.384

2.  Switchable reactions of cyclopropanes with enol silyl ethers. Controllable synthesis of cyclopentanes and 1,6-dicarbonyl compounds.

Authors:  Jian-Ping Qu; Chao Deng; Jian Zhou; Xiu-Li Sun; Yong Tang
Journal:  J Org Chem       Date:  2009-10-16       Impact factor: 4.354

3.  (1S,3R,8S,9S,10R)-2,2-Dichloro-9,10-epoxy-3,7,7,10-tetramethyltricyclo[6.4.0.0(1,3)]dodecane and (1S,3R,8S,10R)-2,2-dichloro-3,7,7,10-tetramethyltricyclo[6.4.0.0(1,3)]dodecan-9-one.

Authors:  F Sbai; M Dakir; A Auhmani; H El Jamili; M Akssira; A Benharref; A Kenz; M Pierrot
Journal:  Acta Crystallogr C       Date:  2002-07-31       Impact factor: 1.172

4.  (1S,3R,8S,9R,10S)-2,2-Dichloro-3,7,7,10-tetra-methyl-9,10-ep-oxy-tricyclo-[6.4.0.0]dodeca-ne.

Authors:  Ahmed Benharref; Lahcen El Ammari; Daniel Avignant; Abdelghani Oudahmane; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-10

5.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

6.  Use of intensity quotients and differences in absolute structure refinement.

Authors:  Simon Parsons; Howard D Flack; Trixie Wagner
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2013-05-17

7.  (1S,3R,8R,9R,10S)-2,2-Dibromo-3,7,7,10-tetra-methyl-9β,10β-ep-oxy-3,7,7,10-tetra-methyl-tricyclo-[6.4.0.0(1,3)]dodeca-ne.

Authors:  Abdelouahd Oukhrib; Ahmed Benharref; Mohamed Saadi; Moha Berraho; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-09

8.  (1S,3S,8R,9S,10R)-9,10-Ep-oxy-3,7,7,10-tetra-methyl-tri-cyclo-[6.4.0.0(1,3)]dodeca-ne.

Authors:  Abdoullah Bimoussa; Aziz Auhmani; My Youssef Ait Itto; Jean-Claude Daran; Abdelwahed Auhmani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-26
  8 in total

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