Literature DB >> 23127075

TOPAS: an innovative proton Monte Carlo platform for research and clinical applications.

J Perl1, J Shin, J Schumann, B Faddegon, H Paganetti.   

Abstract

PURPOSE: While Monte Carlo particle transport has proven useful in many areas (treatment head design, dose calculation, shielding design, and imaging studies) and has been particularly important for proton therapy (due to the conformal dose distributions and a finite beam range in the patient), the available general purpose Monte Carlo codes in proton therapy have been overly complex for most clinical medical physicists. The learning process has large costs not only in time but also in reliability. To address this issue, we developed an innovative proton Monte Carlo platform and tested the tool in a variety of proton therapy applications.
METHODS: Our approach was to take one of the already-established general purpose Monte Carlo codes and wrap and extend it to create a specialized user-friendly tool for proton therapy. The resulting tool, TOol for PArticle Simulation (TOPAS), should make Monte Carlo simulation more readily available for research and clinical physicists. TOPAS can model a passive scattering or scanning beam treatment head, model a patient geometry based on computed tomography (CT) images, score dose, fluence, etc., save and restart a phase space, provides advanced graphics, and is fully four-dimensional (4D) to handle variations in beam delivery and patient geometry during treatment. A custom-designed TOPAS parameter control system was placed at the heart of the code to meet requirements for ease of use, reliability, and repeatability without sacrificing flexibility.
RESULTS: We built and tested the TOPAS code. We have shown that the TOPAS parameter system provides easy yet flexible control over all key simulation areas such as geometry setup, particle source setup, scoring setup, etc. Through design consistency, we have insured that user experience gained in configuring one component, scorer or filter applies equally well to configuring any other component, scorer or filter. We have incorporated key lessons from safety management, proactively removing possible sources of user error such as line-ordering mistakes. We have modeled proton therapy treatment examples including the UCSF eye treatment head, the MGH stereotactic alignment in radiosurgery treatment head and the MGH gantry treatment heads in passive scattering and scanning modes, and we have demonstrated dose calculation based on patient-specific CT data. Initial validation results show agreement with measured data and demonstrate the capabilities of TOPAS in simulating beam delivery in 3D and 4D.
CONCLUSIONS: We have demonstrated TOPAS accuracy and usability in a variety of proton therapy setups. As we are preparing to make this tool freely available for researchers in medical physics, we anticipate widespread use of this tool in the growing proton therapy community.

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Mesh:

Year:  2012        PMID: 23127075      PMCID: PMC3493036          DOI: 10.1118/1.4758060

Source DB:  PubMed          Journal:  Med Phys        ISSN: 0094-2405            Impact factor:   4.071


  29 in total

1.  Assessment of out-of-field absorbed dose and equivalent dose in proton fields.

Authors:  Ben Clasie; Andrew Wroe; Hanne Kooy; Nicolas Depauw; Jay Flanz; Harald Paganetti; Anatoly Rosenfeld
Journal:  Med Phys       Date:  2010-01       Impact factor: 4.071

2.  In-beam PET monitoring of mono-energetic (16)O and (12)C beams: experiments and FLUKA simulations for homogeneous targets.

Authors:  F Sommerer; F Cerutti; K Parodi; A Ferrari; W Enghardt; H Aiginger
Journal:  Phys Med Biol       Date:  2009-06-03       Impact factor: 3.609

3.  Monte Carlo modelling of the treatment line of the Proton Therapy Center in Orsay.

Authors:  A Stankovskiy; S Kerhoas-Cavata; R Ferrand; C Nauraye; L Demarzi
Journal:  Phys Med Biol       Date:  2009-03-25       Impact factor: 3.609

4.  Field size dependence of the output factor in passively scattered proton therapy: influence of range, modulation, air gap, and machine settings.

Authors:  J Daartz; M Engelsman; Harald Paganetti; M R Bussière
Journal:  Med Phys       Date:  2009-07       Impact factor: 4.071

5.  Measurement and calculation of characteristic prompt gamma ray spectra emitted during proton irradiation.

Authors:  J C Polf; S Peterson; M McCleskey; B T Roeder; A Spiridon; S Beddar; L Trache
Journal:  Phys Med Biol       Date:  2009-10-28       Impact factor: 3.609

6.  A case study in proton pencil-beam scanning delivery.

Authors:  Hanne M Kooy; Benjamin M Clasie; Hsiao-Ming Lu; Thomas M Madden; Hassan Bentefour; Nicolas Depauw; Judy A Adams; Alexei V Trofimov; Denis Demaret; Thomas F Delaney; Jacob B Flanz
Journal:  Int J Radiat Oncol Biol Phys       Date:  2010-02-01       Impact factor: 7.038

7.  Monte Carlo patient study on the comparison of prompt gamma and PET imaging for range verification in proton therapy.

Authors:  M Moteabbed; S España; H Paganetti
Journal:  Phys Med Biol       Date:  2011-01-25       Impact factor: 3.609

8.  The accuracy of EGSnrc, Geant4 and PENELOPE Monte Carlo systems for the simulation of electron scatter in external beam radiotherapy.

Authors:  Bruce A Faddegon; Iwan Kawrakow; Yuri Kubyshin; Joseph Perl; Josep Sempau; Laszlo Urban
Journal:  Phys Med Biol       Date:  2009-09-24       Impact factor: 3.609

9.  Clinical implementation of full Monte Carlo dose calculation in proton beam therapy.

Authors:  Harald Paganetti; Hongyu Jiang; Katia Parodi; Roelf Slopsema; Martijn Engelsman
Journal:  Phys Med Biol       Date:  2008-08-13       Impact factor: 3.609

10.  On the clinical spatial resolution achievable with protons and heavier charged particle radiotherapy beams.

Authors:  Pedro Andreo
Journal:  Phys Med Biol       Date:  2009-05-13       Impact factor: 3.609

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  155 in total

1.  Gold nanoparticle induced vasculature damage in radiotherapy: Comparing protons, megavoltage photons, and kilovoltage photons.

Authors:  Yuting Lin; Harald Paganetti; Stephen J McMahon; Jan Schuemann
Journal:  Med Phys       Date:  2015-10       Impact factor: 4.071

2.  A full-scale clinical prototype for proton range verification using prompt gamma-ray spectroscopy.

Authors:  Fernando Hueso-González; Moritz Rabe; Thomas A Ruggieri; Thomas Bortfeld; Joost M Verburg
Journal:  Phys Med Biol       Date:  2018-09-17       Impact factor: 3.609

3.  Experimental validation of the TOPAS Monte Carlo system for passive scattering proton therapy.

Authors:  M Testa; J Schümann; H-M Lu; J Shin; B Faddegon; J Perl; H Paganetti
Journal:  Med Phys       Date:  2013-12       Impact factor: 4.071

4.  Four-dimensional Monte Carlo simulations demonstrating how the extent of intensity-modulation impacts motion effects in proton therapy lung treatments.

Authors:  Stephen Dowdell; Clemens Grassberger; Harald Paganetti
Journal:  Med Phys       Date:  2013-12       Impact factor: 4.071

5.  Helium CT: Monte Carlo simulation results for an ideal source and detector with comparison to proton CT.

Authors:  Pierluigi Piersimoni; Bruce A Faddegon; José Ramos Méndez; Reinhard W Schulte; Lennart Volz; Joao Seco
Journal:  Med Phys       Date:  2018-05-20       Impact factor: 4.071

6.  Recent developments and comprehensive evaluations of a GPU-based Monte Carlo package for proton therapy.

Authors:  Nan Qin; Pablo Botas; Drosoula Giantsoudi; Jan Schuemann; Zhen Tian; Steve B Jiang; Harald Paganetti; Xun Jia
Journal:  Phys Med Biol       Date:  2016-10-03       Impact factor: 3.609

7.  End-of-Range Radiobiological Effect on Rib Fractures in Patients Receiving Proton Therapy for Breast Cancer.

Authors:  Chia-Chun Wang; Aimee L McNamara; Jungwook Shin; Jan Schuemann; Clemens Grassberger; Alphonse G Taghian; Rachel B Jimenez; Shannon M MacDonald; Harald Paganetti
Journal:  Int J Radiat Oncol Biol Phys       Date:  2020-03-30       Impact factor: 7.038

8.  The TOPAS tool for particle simulation, a Monte Carlo simulation tool for physics, biology and clinical research.

Authors:  Bruce Faddegon; José Ramos-Méndez; Jan Schuemann; Aimee McNamara; Jungwook Shin; Joseph Perl; Harald Paganetti
Journal:  Phys Med       Date:  2020-04-03       Impact factor: 2.685

9.  Computational Modeling and Clonogenic Assay for Radioenhancement of Gold Nanoparticles Using 3D Live Cell Images.

Authors:  Wonmo Sung; Yoon Jeong; Hyejin Kim; Hoibin Jeong; Clemens Grassberger; Seongmoon Jung; G-One Ahn; Il Han Kim; Jan Schuemann; Kangwon Lee; Sung-Joon Ye
Journal:  Radiat Res       Date:  2018-08-24       Impact factor: 2.841

10.  Use of the NASA Space Radiation Laboratory at Brookhaven National Laboratory to Conduct Charged Particle Radiobiology Studies Relevant to Ion Therapy.

Authors:  Kathryn D Held; Eleanor A Blakely; Michael D Story; Derek I Lowenstein
Journal:  Radiat Res       Date:  2016-05-19       Impact factor: 2.841

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