Literature DB >> 32247964

The TOPAS tool for particle simulation, a Monte Carlo simulation tool for physics, biology and clinical research.

Bruce Faddegon1, José Ramos-Méndez2, Jan Schuemann3, Aimee McNamara3, Jungwook Shin3, Joseph Perl4, Harald Paganetti3.   

Abstract

PURPOSE: This paper covers recent developments and applications of the TOPAS TOol for PArticle Simulation and presents the approaches used to disseminate TOPAS.
MATERIALS AND METHODS: Fundamental understanding of radiotherapy and imaging is greatly facilitated through accurate and detailed simulation of the passage of ionizing radiation through apparatus and into a patient using Monte Carlo (MC). TOPAS brings Geant4, a reliable, experimentally validated MC tool mainly developed for high energy physics, within easy reach of medical physicists, radiobiologists and clinicians. Requiring no programming knowledge, TOPAS provides all of the flexibility of Geant4.
RESULTS: After 5 years of development followed by its initial release, TOPAS was subsequently expanded from its focus on proton therapy physics to incorporate radiobiology modeling. Next, in 2018, the developers expanded their user support and code maintenance as well as the scope of TOPAS towards supporting X-ray and electron therapy and medical imaging. Improvements have been achieved in user enhancement through software engineering and a graphical user interface, calculational efficiency, validation through experimental benchmarks and QA measurements, and either newly available or recently published applications. A large and rapidly increasing user base demonstrates success in our approach to dissemination of this uniquely accessible and flexible MC research tool.
CONCLUSIONS: The TOPAS developers continue to make strides in addressing the needs of the medical community in applications of ionizing radiation to medicine, creating the only fully integrated platform for four-dimensional simulation of all forms of radiotherapy and imaging with ionizing radiation, with a design that promotes inter-institutional collaboration.
Copyright © 2020. Published by Elsevier Ltd.

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Mesh:

Year:  2020        PMID: 32247964      PMCID: PMC7192305          DOI: 10.1016/j.ejmp.2020.03.019

Source DB:  PubMed          Journal:  Phys Med        ISSN: 1120-1797            Impact factor:   2.685


  50 in total

1.  Efficiency improvements of x-ray simulations in EGSnrc user-codes using bremsstrahlung cross-section enhancement (BCSE).

Authors:  E S M Ali; D W O Rogers
Journal:  Med Phys       Date:  2007-06       Impact factor: 4.071

2.  ALGEBRA: ALgorithm for the heterogeneous dosimetry based on GEANT4 for BRAchytherapy.

Authors:  H Afsharpour; G Landry; M D'Amours; S Enger; B Reniers; E Poon; J-F Carrier; F Verhaegen; L Beaulieu
Journal:  Phys Med Biol       Date:  2012-05-09       Impact factor: 3.609

3.  Improving single-event proton CT by removing nuclear interaction events within the energy/range detector.

Authors:  Lennart Volz; Pierluigi Piersimoni; Robert P Johnson; Vladimir A Bashkirov; Reinhard W Schulte; Joao Seco
Journal:  Phys Med Biol       Date:  2019-08-01       Impact factor: 3.609

4.  The effect of beam purity and scanner complexity on proton CT accuracy.

Authors:  P Piersimoni; J Ramos-Méndez; T Geoghegan; V A Bashkirov; R W Schulte; B A Faddegon
Journal:  Med Phys       Date:  2017-01-09       Impact factor: 4.071

5.  Layered mass geometry: a novel technique to overlay seeds and applicators onto patient geometry in Geant4 brachytherapy simulations.

Authors:  Shirin A Enger; Guillaume Landry; Michel D'Amours; Frank Verhaegen; Luc Beaulieu; Makoto Asai; Joseph Perl
Journal:  Phys Med Biol       Date:  2012-09-14       Impact factor: 3.609

6.  Assessing the Clinical Impact of Approximations in Analytical Dose Calculations for Proton Therapy.

Authors:  Jan Schuemann; Drosoula Giantsoudi; Clemens Grassberger; Maryam Moteabbed; Chul Hee Min; Harald Paganetti
Journal:  Int J Radiat Oncol Biol Phys       Date:  2015-04-08       Impact factor: 7.038

7.  Asymptomatic Late-phase Radiographic Changes Among Chest-Wall Patients Are Associated With a Proton RBE Exceeding 1.1.

Authors:  Tracy S A Underwood; Clemens Grassberger; Rhedise Bass; Shannon M MacDonald; Nandini M Meyersohn; Beow Y Yeap; Rachel B Jimenez; Harald Paganetti
Journal:  Int J Radiat Oncol Biol Phys       Date:  2018-04-17       Impact factor: 7.038

8.  TOPAS-nBio: An Extension to the TOPAS Simulation Toolkit for Cellular and Sub-cellular Radiobiology.

Authors:  J Schuemann; A L McNamara; J Ramos-Méndez; J Perl; K D Held; H Paganetti; S Incerti; B Faddegon
Journal:  Radiat Res       Date:  2019-01-04       Impact factor: 2.841

9.  Geometrical splitting technique to improve the computational efficiency in Monte Carlo calculations for proton therapy.

Authors:  José Ramos-Méndez; Joseph Perl; Bruce Faddegon; Jan Schümann; Harald Paganetti
Journal:  Med Phys       Date:  2013-04       Impact factor: 4.071

10.  Validation and application of a fast Monte Carlo algorithm for assessing the clinical impact of approximations in analytical dose calculations for pencil beam scanning proton therapy.

Authors:  Sheng Huang; Kevin Souris; Siyang Li; Minglei Kang; Ana Maria Barragan Montero; Guillaume Janssens; Alexander Lin; Elizabeth Garver; Christopher Ainsley; Paige Taylor; Ying Xiao; Liyong Lin
Journal:  Med Phys       Date:  2018-10-26       Impact factor: 4.071

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  18 in total

1.  A Millimeter-scale Single Charged Particle Dosimeter for Cancer Radiotherapy.

Authors:  Kyoungtae Lee; Jessica Scholey; Eric B Norman; Inder K Daftari; Kavita K Mishra; Bruce A Faddegon; Michel M Maharbiz; Mekhail Anwar
Journal:  IEEE J Solid-State Circuits       Date:  2020-09-23       Impact factor: 5.013

2.  The dosimetric enhancement of GRID profiles using an external collimator in pencil beam scanning proton therapy.

Authors:  Blake R Smith; Nicholas P Nelson; Theodore J Geoghegan; Kaustubh A Patwardhan; Patrick M Hill; Jen Yu; Alonso N Gutiérrez; Bryan G Allen; Daniel E Hyer
Journal:  Med Phys       Date:  2022-02-21       Impact factor: 4.071

3.  Pre- and post-treatment image-based dosimetry in90Y-microsphere radioembolization using the TOPAS Monte Carlo toolkit.

Authors:  Alejandro Bertolet; Eric Wehrenberg-Klee; Mislav Bobić; Clemens Grassberger; Joseph Perl; Harald Paganetti; Jan Schuemann
Journal:  Phys Med Biol       Date:  2021-12-29       Impact factor: 3.609

4.  A comparison of proton stopping power measured with proton CT and x-ray CT in fresh postmortem porcine structures.

Authors:  Don F DeJongh; Ethan A DeJongh; Victor Rykalin; Greg DeFillippo; Mark Pankuch; Andrew W Best; George Coutrakon; Kirk L Duffin; Nicholas T Karonis; Caesar E Ordoñez; Christina Sarosiek; Reinhard W Schulte; John R Winans; Alec M Block; Courtney L Hentz; James S Welsh
Journal:  Med Phys       Date:  2021-11-18       Impact factor: 4.071

5.  Impact of DNA Geometry and Scoring on Monte Carlo Track-Structure Simulations of Initial Radiation-Induced Damage.

Authors:  Alejandro Bertolet; José Ramos-Méndez; Aimee McNamara; Dohyeon Yoo; Samuel Ingram; Nicholas Henthorn; John-William Warmenhoven; Bruce Faddegon; Michael Merchant; Stephen J McMahon; Harald Paganetti; Jan Schuemann
Journal:  Radiat Res       Date:  2022-09-01       Impact factor: 3.372

6.  TOPAS-nBio validation for simulating water radiolysis and DNA damage under low-LET irradiation.

Authors:  J Ramos-Méndez; J A LaVerne; N Domínguez-Kondo; J Milligan; V Štěpán; K Stefanová; Y Perrot; C Villagrasa; W-G Shin; S Incerti; A McNamara; H Paganetti; J Perl; J Schuemann; B Faddegon
Journal:  Phys Med Biol       Date:  2021-09-03       Impact factor: 4.174

Review 7.  Monte Carlo methods for device simulations in radiation therapy.

Authors:  Hyojun Park; Harald Paganetti; Jan Schuemann; Xun Jia; Chul Hee Min
Journal:  Phys Med Biol       Date:  2021-09-14       Impact factor: 4.174

8.  The relation between microdosimetry and induction of direct damage to DNA by alpha particles.

Authors:  Alejandro Bertolet; José Ramos-Méndez; Harald Paganetti; Jan Schuemann
Journal:  Phys Med Biol       Date:  2021-07-30       Impact factor: 4.174

9.  A reconstruction approach for proton computed tomography by modeling the integral depth dose of the scanning proton pencil beam.

Authors:  Xinyuan Chen; Maria Medrano; Baozhou Sun; Yao Hao; Francisco J Reynoso; Arash Darafsheh; Deshan Yang; Tiezhi Zhang; Tianyu Zhao
Journal:  Med Phys       Date:  2022-02-14       Impact factor: 4.506

10.  Moving Forward in the Next Decade: Radiation Oncology Sciences for Patient-Centered Cancer Care.

Authors:  C Norman Coleman; Jeffrey C Buchsbaum; Pataje G S Prasanna; Jacek Capala; Ceferino Obcemea; Michael G Espey; Mansoor M Ahmed; Julie A Hong; Bhadrasain Vikram
Journal:  JNCI Cancer Spectr       Date:  2021-05-17
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