Literature DB >> 23105172

Fabrication of X-ray compatible microfluidic platforms for protein crystallization.

Sudipto Guha1, Sarah L Perry, Ashtamurthy S Pawate, Paul J A Kenis.   

Abstract

This paper reports a method for fabricating multilayer microfluidic protein crystallization platforms using different materials to achieve X-ray transparency and compatibility with crystallization reagents. To validate this approach, three soluble proteins, lysozyme, thaumatin, and ribonuclease A were crystallized on-chip, followed by on-chip diffraction data collection. We also report a chip with an array of wells for screening different conditions that consume a minimal amount of protein solution as compared to traditional screening methods. A large number of high quality isomorphous protein crystals can be grown in the wells, after which slices of X-ray data can be collected from many crystals still residing within the wells. Complete protein structures can be obtained by merging these slices of data followed by further processing with crystallography software. This approach of using an x-ray transparent chip for screening, crystal growth, and X-ray data collection enables room temperature data collection from many crystals mounted in parallel, which thus eliminates crystal handling and minimizes radiation damage to the crystals.

Entities:  

Year:  2012        PMID: 23105172      PMCID: PMC3480190          DOI: 10.1016/j.snb.2012.08.048

Source DB:  PubMed          Journal:  Sens Actuators B Chem        ISSN: 0925-4005            Impact factor:   7.460


  43 in total

1.  Physical studies of lysozyme. I. Characterization.

Authors:  A J SOPHIANOPOULOS; C K RHODES; D N HOLCOMB; K E VAN HOLDE
Journal:  J Biol Chem       Date:  1962-04       Impact factor: 5.157

Review 2.  Microfluidic systems in proteomics.

Authors:  Niels Lion; Tatiana C Rohner; Loïc Dayon; Isabelle L Arnaud; Eugen Damoc; Nikolay Youhnovski; Zhi-Yong Wu; Christophe Roussel; Jacques Josserand; Henrik Jensen; Joël S Rossier; Michael Przybylski; Hubert H Girault
Journal:  Electrophoresis       Date:  2003-11       Impact factor: 3.535

Review 3.  Let's get digital: digitizing chemical biology with microfluidics.

Authors:  Mais J Jebrail; Aaron R Wheeler
Journal:  Curr Opin Chem Biol       Date:  2010-07-30       Impact factor: 8.822

4.  A microfluidic platform for pharmaceutical salt screening.

Authors:  Michael R Thorson; Sachit Goyal; Benjamin R Schudel; Charles F Zukoski; Geoff G Z Zhang; Yuchuan Gong; Paul J A Kenis
Journal:  Lab Chip       Date:  2011-09-28       Impact factor: 6.799

5.  A kinetic model to simulate protein crystal growth in an evaporation-based crystallization platform.

Authors:  Sameer Talreja; Paul J A Kenis; Charles F Zukoski
Journal:  Langmuir       Date:  2007-03-17       Impact factor: 3.882

6.  Rapid Prototyping of Microfluidic Systems in Poly(dimethylsiloxane).

Authors:  D C Duffy; J C McDonald; O J Schueller; G M Whitesides
Journal:  Anal Chem       Date:  1998-12-01       Impact factor: 6.986

7.  Microfluidic Generation of Lipidic Mesophases for Membrane Protein Crystallization.

Authors:  Sarah L Perry; Griffin W Roberts; Joshua D Tice; Robert B Gennis; Paul J A Kenis
Journal:  Cryst Growth Des       Date:  2009-06-03       Impact factor: 4.076

8.  Hard top soft bottom microfluidic devices for cell culture and chemical analysis.

Authors:  Geeta Mehta; Jay Lee; Wansik Cha; Yi-Chung Tung; Jennifer J Linderman; Shuichi Takayama
Journal:  Anal Chem       Date:  2009-05-15       Impact factor: 6.986

9.  The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist.

Authors:  Veli-Pekka Jaakola; Mark T Griffith; Michael A Hanson; Vadim Cherezov; Ellen Y T Chien; J Robert Lane; Adriaan P Ijzerman; Raymond C Stevens
Journal:  Science       Date:  2008-10-02       Impact factor: 47.728

10.  X-CHIP: an integrated platform for high-throughput protein crystallization and on-the-chip X-ray diffraction data collection.

Authors:  Gera Kisselman; Wei Qiu; Vladimir Romanov; Christine M Thompson; Robert Lam; Kevin P Battaile; Emil F Pai; Nickolay Y Chirgadze
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-05-12
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  25 in total

1.  In situ serial Laue diffraction on a microfluidic crystallization device.

Authors:  Sarah L Perry; Sudipto Guha; Ashtamurthy S Pawate; Robert Henning; Irina Kosheleva; Vukica Srajer; Paul J A Kenis; Zhong Ren
Journal:  J Appl Crystallogr       Date:  2014-11-18       Impact factor: 3.304

2.  Towards time-resolved serial crystallography in a microfluidic device.

Authors:  Ashtamurthy S Pawate; Vukica Šrajer; Jeremy Schieferstein; Sudipto Guha; Robert Henning; Irina Kosheleva; Marius Schmidt; Zhong Ren; Paul J A Kenis; Sarah L Perry
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-06-27       Impact factor: 1.056

3.  X-ray transparent microfluidic chips for high-throughput screening and optimization of in meso membrane protein crystallization.

Authors:  Jeremy M Schieferstein; Ashtamurthy S Pawate; Chang Sun; Frank Wan; Paige N Sheraden; Jana Broecker; Oliver P Ernst; Robert B Gennis; Paul J A Kenis
Journal:  Biomicrofluidics       Date:  2017-04-24       Impact factor: 2.800

4.  Graphene-based microfluidics for serial crystallography.

Authors:  Shuo Sui; Yuxi Wang; Kristopher W Kolewe; Vukica Srajer; Robert Henning; Jessica D Schiffman; Christos Dimitrakopoulos; Sarah L Perry
Journal:  Lab Chip       Date:  2016-08-02       Impact factor: 6.799

5.  Microfluidic characterization of macromolecular liquid-liquid phase separation.

Authors:  Anne Bremer; Tanja Mittag; Michael Heymann
Journal:  Lab Chip       Date:  2020-11-10       Impact factor: 6.799

6.  Crystallization via tubing microfluidics permits both in situ and ex situ X-ray diffraction.

Authors:  Charline J J Gerard; Gilles Ferry; Laurent M Vuillard; Jean A Boutin; Leonard M G Chavas; Tiphaine Huet; Nathalie Ferte; Romain Grossier; Nadine Candoni; Stéphane Veesler
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2017-10-02       Impact factor: 1.056

7.  X-ray transparent microfluidic platforms for membrane protein crystallization with microseeds.

Authors:  Jeremy M Schieferstein; Ashtamurthy S Pawate; Michael J Varel; Sudipto Guha; Ieva Astrauskaite; Robert B Gennis; Paul J A Kenis
Journal:  Lab Chip       Date:  2018-03-13       Impact factor: 6.799

8.  An X-ray transparent microfluidic platform for screening of the phase behavior of lipidic mesophases.

Authors:  Daria S Khvostichenko; Elena Kondrashkina; Sarah L Perry; Ashtamurthy S Pawate; Keith Brister; Paul J A Kenis
Journal:  Analyst       Date:  2013-07-24       Impact factor: 4.616

9.  A microfluidic approach for protein structure determination at room temperature via on-chip anomalous diffraction.

Authors:  Sarah L Perry; Sudipto Guha; Ashtamurthy S Pawate; Amrit Bhaskarla; Vinayak Agarwal; Satish K Nair; Paul J A Kenis
Journal:  Lab Chip       Date:  2013-07-05       Impact factor: 6.799

10.  Watching Proteins Function with Time-resolved X-ray Crystallography.

Authors:  Vukica Šrajer; Marius Schmidt
Journal:  J Phys D Appl Phys       Date:  2017-08-22       Impact factor: 3.207

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