Literature DB >> 33057557

Microfluidic characterization of macromolecular liquid-liquid phase separation.

Anne Bremer1, Tanja Mittag1, Michael Heymann2.   

Abstract

Liquid-liquid phase separation plays important roles in the compartmentalization of cells. Developing an understanding of how phase separation is encoded in biomacromolecules requires quantitative mapping of their phase behavior. Given that such experiments require large quantities of the biomolecule of interest, these efforts have been lagging behind the recent breadth of biological insights. Herein, we present a microfluidic phase chip that enables the measurement of saturation concentrations over at least three orders of magnitude for a broad spectrum of biomolecules and solution conditions. The phase chip consists of five units, each made of twenty individual sample chambers to allow the measurement of five sample conditions simultaneously. The analytes are slowly concentrated via evaporation of water, which is replaced by oil, until the sample undergoes phase separation into a dilute and dense phase. We show that the phase chip lowers the required sample quantity by 98% while offering six-fold better statistics in comparison to standard manual experiments that involve centrifugal separation of dilute and dense phases. We further show that the saturation concentrations measured in chips are in agreement with previously reported data for a variety of biomolecules. Concomitantly, time-dependent changes of the dense phase morphology and potential off-pathway processes, including aggregation, can be monitored microscopically. In summary, the phase chip is suited to exploring sequence-to-binodal relationships by enabling the determination of a large number of saturation concentrations at low protein cost.

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Year:  2020        PMID: 33057557      PMCID: PMC7658026          DOI: 10.1039/d0lc00613k

Source DB:  PubMed          Journal:  Lab Chip        ISSN: 1473-0189            Impact factor:   6.799


  50 in total

1.  Control and measurement of the phase behavior of aqueous solutions using microfluidics.

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Journal:  J Am Chem Soc       Date:  2007-06-20       Impact factor: 15.419

2.  Valence and patterning of aromatic residues determine the phase behavior of prion-like domains.

Authors:  Erik W Martin; Alex S Holehouse; Ivan Peran; Mina Farag; J Jeremias Incicco; Anne Bremer; Christy R Grace; Andrea Soranno; Rohit V Pappu; Tanja Mittag
Journal:  Science       Date:  2020-02-07       Impact factor: 47.728

3.  Phase Separation and Single-Chain Compactness of Charged Disordered Proteins Are Strongly Correlated.

Authors:  Yi-Hsuan Lin; Hue Sun Chan
Journal:  Biophys J       Date:  2017-05-05       Impact factor: 4.033

4.  A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins.

Authors:  Jie Wang; Jeong-Mo Choi; Alex S Holehouse; Hyun O Lee; Xiaojie Zhang; Marcus Jahnel; Shovamayee Maharana; Régis Lemaitre; Andrei Pozniakovsky; David Drechsel; Ina Poser; Rohit V Pappu; Simon Alberti; Anthony A Hyman
Journal:  Cell       Date:  2018-06-28       Impact factor: 41.582

5.  TIA1 Mutations in Amyotrophic Lateral Sclerosis and Frontotemporal Dementia Promote Phase Separation and Alter Stress Granule Dynamics.

Authors:  Ian R Mackenzie; Alexandra M Nicholson; Mohona Sarkar; James Messing; Maria D Purice; Cyril Pottier; Kavya Annu; Matt Baker; Ralph B Perkerson; Aishe Kurti; Billie J Matchett; Tanja Mittag; Jamshid Temirov; Ging-Yuek R Hsiung; Charles Krieger; Melissa E Murray; Masato Kato; John D Fryer; Leonard Petrucelli; Lorne Zinman; Sandra Weintraub; Marsel Mesulam; Julia Keith; Sasha A Zivkovic; Veronica Hirsch-Reinshagen; Raymond P Roos; Stephan Züchner; Neill R Graff-Radford; Ronald C Petersen; Richard J Caselli; Zbigniew K Wszolek; Elizabeth Finger; Carol Lippa; David Lacomis; Heather Stewart; Dennis W Dickson; Hong Joo Kim; Ekaterina Rogaeva; Eileen Bigio; Kevin B Boylan; J Paul Taylor; Rosa Rademakers
Journal:  Neuron       Date:  2017-08-16       Impact factor: 17.173

6.  Phase separation by low complexity domains promotes stress granule assembly and drives pathological fibrillization.

Authors:  Amandine Molliex; Jamshid Temirov; Jihun Lee; Maura Coughlin; Anderson P Kanagaraj; Hong Joo Kim; Tanja Mittag; J Paul Taylor
Journal:  Cell       Date:  2015-09-24       Impact factor: 41.582

7.  Phase transitions of multivalent proteins can promote clustering of membrane receptors.

Authors:  Sudeep Banjade; Michael K Rosen
Journal:  Elife       Date:  2014-10-16       Impact factor: 8.140

8.  Sequence heuristics to encode phase behaviour in intrinsically disordered protein polymers.

Authors:  Felipe García Quiroz; Ashutosh Chilkoti
Journal:  Nat Mater       Date:  2015-09-21       Impact factor: 43.841

9.  A single N-terminal phosphomimic disrupts TDP-43 polymerization, phase separation, and RNA splicing.

Authors:  Ailin Wang; Alexander E Conicella; Hermann Broder Schmidt; Erik W Martin; Shannon N Rhoads; Ashley N Reeb; Amanda Nourse; Daniel Ramirez Montero; Veronica H Ryan; Rajat Rohatgi; Frank Shewmaker; Mandar T Naik; Tanja Mittag; Yuna M Ayala; Nicolas L Fawzi
Journal:  EMBO J       Date:  2018-02-09       Impact factor: 11.598

Review 10.  Assemblages: functional units formed by cellular phase separation.

Authors:  Jeffrey A Toretsky; Peter E Wright
Journal:  J Cell Biol       Date:  2014-09-01       Impact factor: 10.539

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  4 in total

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Authors:  Emil G P Stender; Soumik Ray; Rasmus K Norrild; Jacob Aunstrup Larsen; Daniel Petersen; Azad Farzadfard; Céline Galvagnion; Henrik Jensen; Alexander K Buell
Journal:  Nat Commun       Date:  2021-12-15       Impact factor: 14.919

Review 2.  Using quantitative reconstitution to investigate multicomponent condensates.

Authors:  Simon L Currie; Michael K Rosen
Journal:  RNA       Date:  2021-11-12       Impact factor: 4.942

3.  Evolution and Single-Droplet Analysis of Fuel-Driven Compartments by Droplet-Based Microfluidics.

Authors:  Alexander M Bergmann; Carsten Donau; Fabian Späth; Kevin Jahnke; Kerstin Göpfrich; Job Boekhoven
Journal:  Angew Chem Int Ed Engl       Date:  2022-06-24       Impact factor: 16.823

Review 4.  Polyphasic linkage and the impact of ligand binding on the regulation of biomolecular condensates.

Authors:  Kiersten M Ruff; Furqan Dar; Rohit V Pappu
Journal:  Biophys Rev       Date:  2021-06-15
  4 in total

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