Literature DB >> 23828485

A microfluidic approach for protein structure determination at room temperature via on-chip anomalous diffraction.

Sarah L Perry1, Sudipto Guha, Ashtamurthy S Pawate, Amrit Bhaskarla, Vinayak Agarwal, Satish K Nair, Paul J A Kenis.   

Abstract

We report a microfluidic approach for de novo protein structure determination via crystallization screening and optimization, as well as on-chip X-ray diffraction data collection. The structure of phosphonoacetate hydrolase (PhnA) has been solved to 2.11 Åvia on-chip collection of anomalous data that has an order of magnitude lower mosaicity than what is typical for traditional structure determination methods.

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Year:  2013        PMID: 23828485      PMCID: PMC3755953          DOI: 10.1039/c3lc50276g

Source DB:  PubMed          Journal:  Lab Chip        ISSN: 1473-0189            Impact factor:   6.799


  43 in total

Review 1.  Protein crystallization by capillary counterdiffusion for applied crystallographic structure determination.

Authors:  Joseph D Ng; José A Gavira; Juan M García-Ruíz
Journal:  J Struct Biol       Date:  2003-04       Impact factor: 2.867

2.  A droplet-based, composite PDMS/glass capillary microfluidic system for evaluating protein crystallization conditions by microbatch and vapor-diffusion methods with on-chip X-ray diffraction.

Authors:  Bo Zheng; Joshua D Tice; L Spencer Roach; Rustem F Ismagilov
Journal:  Angew Chem Int Ed Engl       Date:  2004-05-03       Impact factor: 15.336

Review 3.  How many drug targets are there?

Authors:  John P Overington; Bissan Al-Lazikani; Andrew L Hopkins
Journal:  Nat Rev Drug Discov       Date:  2006-12       Impact factor: 84.694

4.  Higher-throughput approaches to crystallization and crystal structure determination.

Authors:  Mark J Fogg; Anthony J Wilkinson
Journal:  Biochem Soc Trans       Date:  2008-08       Impact factor: 5.407

5.  Structural and mechanistic insights into C-P bond hydrolysis by phosphonoacetate hydrolase.

Authors:  Vinayak Agarwal; Svetlana A Borisova; William W Metcalf; Wilfred A van der Donk; Satish K Nair
Journal:  Chem Biol       Date:  2011-10-28

6.  High-throughput expression and purification of membrane proteins.

Authors:  Filippo Mancia; James Love
Journal:  J Struct Biol       Date:  2010-04-13       Impact factor: 2.867

7.  Introduction to phasing.

Authors:  Garry L Taylor
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Ab initio crystallographic structure determination of insulin from protein to electron density without crystal handling.

Authors:  José A Gavira; Diana Toh; Javier Lopéz-Jaramillo; Juan M García-Ruíz; Joseph D Ng
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-06-20

9.  The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist.

Authors:  Veli-Pekka Jaakola; Mark T Griffith; Michael A Hanson; Vadim Cherezov; Ellen Y T Chien; J Robert Lane; Adriaan P Ijzerman; Raymond C Stevens
Journal:  Science       Date:  2008-10-02       Impact factor: 47.728

10.  X-CHIP: an integrated platform for high-throughput protein crystallization and on-the-chip X-ray diffraction data collection.

Authors:  Gera Kisselman; Wei Qiu; Vladimir Romanov; Christine M Thompson; Robert Lam; Kevin P Battaile; Emil F Pai; Nickolay Y Chirgadze
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-05-12
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  11 in total

1.  In situ X-ray data collection and structure phasing of protein crystals at Structural Biology Center 19-ID.

Authors:  Karolina Michalska; Kemin Tan; Changsoo Chang; Hui Li; Catherine Hatzos-Skintges; Michael Molitsky; Randy Alkire; Andrzej Joachimiak
Journal:  J Synchrotron Radiat       Date:  2015-10-15       Impact factor: 2.616

2.  In situ serial Laue diffraction on a microfluidic crystallization device.

Authors:  Sarah L Perry; Sudipto Guha; Ashtamurthy S Pawate; Robert Henning; Irina Kosheleva; Vukica Srajer; Paul J A Kenis; Zhong Ren
Journal:  J Appl Crystallogr       Date:  2014-11-18       Impact factor: 3.304

3.  Towards time-resolved serial crystallography in a microfluidic device.

Authors:  Ashtamurthy S Pawate; Vukica Šrajer; Jeremy Schieferstein; Sudipto Guha; Robert Henning; Irina Kosheleva; Marius Schmidt; Zhong Ren; Paul J A Kenis; Sarah L Perry
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-06-27       Impact factor: 1.056

4.  Graphene-based microfluidics for serial crystallography.

Authors:  Shuo Sui; Yuxi Wang; Kristopher W Kolewe; Vukica Srajer; Robert Henning; Jessica D Schiffman; Christos Dimitrakopoulos; Sarah L Perry
Journal:  Lab Chip       Date:  2016-08-02       Impact factor: 6.799

5.  Capture and X-ray diffraction studies of protein microcrystals in a microfluidic trap array.

Authors:  Artem Y Lyubimov; Thomas D Murray; Antoine Koehl; Ismail Emre Araci; Monarin Uervirojnangkoorn; Oliver B Zeldin; Aina E Cohen; S Michael Soltis; Elizabeth L Baxter; Aaron S Brewster; Nicholas K Sauter; Axel T Brunger; James M Berger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-03-27

6.  A multicrystal diffraction data-collection approach for studying structural dynamics with millisecond temporal resolution.

Authors:  Robin Schubert; Svetlana Kapis; Yannig Gicquel; Gleb Bourenkov; Thomas R Schneider; Michael Heymann; Christian Betzel; Markus Perbandt
Journal:  IUCrJ       Date:  2016-10-26       Impact factor: 4.769

7.  Fabrication of Microfluidic Valves Using a Hydrogel Molding Method.

Authors:  Yusuke Sugiura; Hirotada Hirama; Toru Torii
Journal:  Sci Rep       Date:  2015-08-24       Impact factor: 4.379

8.  X-ray Transparent Microfluidic Chip for Mesophase-Based Crystallization of Membrane Proteins and On-Chip Structure Determination.

Authors:  Daria S Khvostichenko; Jeremy M Schieferstein; Ashtamurthy S Pawate; Philip D Laible; Paul J A Kenis
Journal:  Cryst Growth Des       Date:  2014-08-21       Impact factor: 4.076

9.  Microfluidic Chips for In Situ Crystal X-ray Diffraction and In Situ Dynamic Light Scattering for Serial Crystallography.

Authors:  Yannig Gicquel; Robin Schubert; Svetlana Kapis; Gleb Bourenkov; Thomas Schneider; Markus Perbandt; Christian Betzel; Henry N Chapman; Michael Heymann
Journal:  J Vis Exp       Date:  2018-04-24       Impact factor: 1.355

10.  An automated platform for in situ serial crystallography at room temperature.

Authors:  Zhong Ren; Cong Wang; Heewhan Shin; Sepalika Bandara; Indika Kumarapperuma; Michael Y Ren; Weijia Kang; Xiaojing Yang
Journal:  IUCrJ       Date:  2020-09-19       Impact factor: 4.769

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