Literature DB >> 28469762

X-ray transparent microfluidic chips for high-throughput screening and optimization of in meso membrane protein crystallization.

Jeremy M Schieferstein1, Ashtamurthy S Pawate1, Chang Sun2, Frank Wan1, Paige N Sheraden2, Jana Broecker3, Oliver P Ernst, Robert B Gennis2, Paul J A Kenis1.   

Abstract

Elucidating and clarifying the function of membrane proteins ultimately requires atomic resolution structures as determined most commonly by X-ray crystallography. Many high impact membrane protein structures have resulted from advanced techniques such as in meso crystallization that present technical difficulties for the set-up and scale-out of high-throughput crystallization experiments. In prior work, we designed a novel, low-throughput X-ray transparent microfluidic device that automated the mixing of protein and lipid by diffusion for in meso crystallization trials. Here, we report X-ray transparent microfluidic devices for high-throughput crystallization screening and optimization that overcome the limitations of scale and demonstrate their application to the crystallization of several membrane proteins. Two complementary chips are presented: (1) a high-throughput screening chip to test 192 crystallization conditions in parallel using as little as 8 nl of membrane protein per well and (2) a crystallization optimization chip to rapidly optimize preliminary crystallization hits through fine-gradient re-screening. We screened three membrane proteins for new in meso crystallization conditions, identifying several preliminary hits that we tested for X-ray diffraction quality. Further, we identified and optimized the crystallization condition for a photosynthetic reaction center mutant and solved its structure to a resolution of 3.5 Å.

Entities:  

Year:  2017        PMID: 28469762      PMCID: PMC5403737          DOI: 10.1063/1.4981818

Source DB:  PubMed          Journal:  Biomicrofluidics        ISSN: 1932-1058            Impact factor:   2.800


  50 in total

1.  Characterization of a semi-stable, charge-separated state in reaction centers from Rhodobacter sphaeroides.

Authors:  Ulf Andréasson; Lars-Erik Andréasson
Journal:  Photosynth Res       Date:  2003       Impact factor: 3.573

Review 2.  Cryocooling and radiation damage in macromolecular crystallography.

Authors:  Elspeth F Garman; Robin Leslie Owen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

Review 3.  How many drug targets are there?

Authors:  John P Overington; Bissan Al-Lazikani; Andrew L Hopkins
Journal:  Nat Rev Drug Discov       Date:  2006-12       Impact factor: 84.694

4.  Use of a robot for high-throughput crystallization of membrane proteins in lipidic mesophases.

Authors:  Dianfan Li; Coilín Boland; Kilian Walsh; Martin Caffrey
Journal:  J Vis Exp       Date:  2012-09-01       Impact factor: 1.355

5.  Crystal structure of the β2 adrenergic receptor-Gs protein complex.

Authors:  Søren G F Rasmussen; Brian T DeVree; Yaozhong Zou; Andrew C Kruse; Ka Young Chung; Tong Sun Kobilka; Foon Sun Thian; Pil Seok Chae; Els Pardon; Diane Calinski; Jesper M Mathiesen; Syed T A Shah; Joseph A Lyons; Martin Caffrey; Samuel H Gellman; Jan Steyaert; Georgios Skiniotis; William I Weis; Roger K Sunahara; Brian K Kobilka
Journal:  Nature       Date:  2011-07-19       Impact factor: 49.962

6.  Monoolein lipid phases as incorporation and enrichment materials for membrane protein crystallization.

Authors:  Ellen Wallace; David Dranow; Philip D Laible; Jeff Christensen; Peter Nollert
Journal:  PLoS One       Date:  2011-08-31       Impact factor: 3.240

Review 7.  Serial femtosecond crystallography: the first five years.

Authors:  Ilme Schlichting
Journal:  IUCrJ       Date:  2015-02-03       Impact factor: 4.769

Review 8.  Current progress in Structure-Based Rational Drug Design marks a new mindset in drug discovery.

Authors:  Valère Lounnas; Tina Ritschel; Jan Kelder; Ross McGuire; Robert P Bywater; Nicolas Foloppe
Journal:  Comput Struct Biotechnol J       Date:  2013-04-02       Impact factor: 7.271

9.  Fixed-target protein serial microcrystallography with an x-ray free electron laser.

Authors:  Mark S Hunter; Brent Segelke; Marc Messerschmidt; Garth J Williams; Nadia A Zatsepin; Anton Barty; W Henry Benner; David B Carlson; Matthew Coleman; Alexander Graf; Stefan P Hau-Riege; Tommaso Pardini; M Marvin Seibert; James Evans; Sébastien Boutet; Matthias Frank
Journal:  Sci Rep       Date:  2014-08-12       Impact factor: 4.379

10.  Experimental phasing for structure determination using membrane-protein crystals grown by the lipid cubic phase method.

Authors:  Dianfan Li; Valerie E Pye; Martin Caffrey
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-01-01
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  1 in total

1.  High-throughput in situ X-ray screening of and data collection from protein crystals at room temperature and under cryogenic conditions.

Authors:  Jana Broecker; Takefumi Morizumi; Wei-Lin Ou; Viviane Klingel; Anling Kuo; David J Kissick; Andrii Ishchenko; Ming-Yue Lee; Shenglan Xu; Oleg Makarov; Vadim Cherezov; Craig M Ogata; Oliver P Ernst
Journal:  Nat Protoc       Date:  2018-01-04       Impact factor: 13.491

  1 in total

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