Literature DB >> 22995833

Mechanisms that impact microRNA stability in plants.

Yuanyuan Zhao1, Beixin Mo, Xuemi Chen.   

Abstract

microRNAs (miRNAs) are 20-24 nucleotide RNAs that regulate a variety of developmental and metabolic processes. The accumulation of miRNAs in vivo can be controlled at multiple levels. In addition to miRNA biogenesis, mechanisms that lead to RNA degradation, such as 3' uridylation and 3' truncation, also affect the steady-state levels of miRNAs. On the other hand, 2'-O-methylation in plant miRNAs protects their 3' ends from truncation and uridylation. The recent identification of HESO1 as the key enzyme responsible for miRNA uridylation in Arabidopsis was a first step toward a full understanding of the mechanisms underlying miRNA turnover. Analyses of the heso1 mutant predicted the existence of another uridylation activity and a previously unknown nuclease that act on miRNAs. The future identification of these enzymes will enrich our understanding of miRNA turnover.

Entities:  

Keywords:  HEN1; HESO1; argonaute; methylation; miRNA stability; miRNA turnover; microRNA; uridylation

Mesh:

Substances:

Year:  2012        PMID: 22995833      PMCID: PMC3583851          DOI: 10.4161/rna.22034

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  47 in total

1.  A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA.

Authors:  G Hutvágner; J McLachlan; A E Pasquinelli; E Bálint; T Tuschl; P D Zamore
Journal:  Science       Date:  2001-07-12       Impact factor: 47.728

2.  Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans.

Authors:  R F Ketting; S E Fischer; E Bernstein; T Sijen; G J Hannon; R H Plasterk
Journal:  Genes Dev       Date:  2001-10-15       Impact factor: 11.361

3.  Active turnover modulates mature microRNA activity in Caenorhabditis elegans.

Authors:  Saibal Chatterjee; Helge Grosshans
Journal:  Nature       Date:  2009-09-06       Impact factor: 49.962

4.  Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA.

Authors:  Cesar Llave; Zhixin Xie; Kristin D Kasschau; James C Carrington
Journal:  Science       Date:  2002-09-20       Impact factor: 47.728

5.  The nuclear RNase III Drosha initiates microRNA processing.

Authors:  Yoontae Lee; Chiyoung Ahn; Jinju Han; Hyounjeong Choi; Jaekwang Kim; Jeongbin Yim; Junho Lee; Patrick Provost; Olof Rådmark; Sunyoung Kim; V Narry Kim
Journal:  Nature       Date:  2003-09-25       Impact factor: 49.962

Review 6.  MicroRNA biogenesis and function in plants.

Authors:  Xuemei Chen
Journal:  FEBS Lett       Date:  2005-08-09       Impact factor: 4.124

7.  Differential impact of the HEN1 homolog HENN-1 on 21U and 26G RNAs in the germline of Caenorhabditis elegans.

Authors:  Leonie M Kamminga; Josien C van Wolfswinkel; Maartje J Luteijn; Lucas J T Kaaij; Marloes P Bagijn; Alexandra Sapetschnig; Eric A Miska; Eugene Berezikov; René F Ketting
Journal:  PLoS Genet       Date:  2012-07-19       Impact factor: 5.917

8.  ARGONAUTE10 and ARGONAUTE1 regulate the termination of floral stem cells through two microRNAs in Arabidopsis.

Authors:  Lijuan Ji; Xigang Liu; Jun Yan; Wenming Wang; Rae Eden Yumul; Yun Ju Kim; Thanh Theresa Dinh; Jun Liu; Xia Cui; Binglian Zheng; Manu Agarwal; Chunyan Liu; Xiaofeng Cao; Guiliang Tang; Xuemei Chen
Journal:  PLoS Genet       Date:  2011-03-31       Impact factor: 5.917

9.  Degradation of cellular mir-27 by a novel, highly abundant viral transcript is important for efficient virus replication in vivo.

Authors:  Lisa Marcinowski; Mélanie Tanguy; Astrid Krmpotic; Bernd Rädle; Vanda J Lisnić; Lee Tuddenham; Béatrice Chane-Woon-Ming; Zsolt Ruzsics; Florian Erhard; Corinna Benkartek; Marina Babic; Ralf Zimmer; Joanne Trgovcich; Ulrich H Koszinowski; Stipan Jonjic; Sébastien Pfeffer; Lars Dölken
Journal:  PLoS Pathog       Date:  2012-02-09       Impact factor: 6.823

10.  Methylation as a crucial step in plant microRNA biogenesis.

Authors:  Bin Yu; Zhiyong Yang; Junjie Li; Svetlana Minakhina; Maocheng Yang; Richard W Padgett; Ruth Steward; Xuemei Chen
Journal:  Science       Date:  2005-02-11       Impact factor: 47.728

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  25 in total

Review 1.  Biogenesis, turnover, and mode of action of plant microRNAs.

Authors:  Kestrel Rogers; Xuemei Chen
Journal:  Plant Cell       Date:  2013-07-23       Impact factor: 11.277

2.  Plant microRNAs display differential 3' truncation and tailing modifications that are ARGONAUTE1 dependent and conserved across species.

Authors:  Jixian Zhai; Yuanyuan Zhao; Stacey A Simon; Sheng Huang; Katherine Petsch; Siwaret Arikit; Manoj Pillay; Lijuan Ji; Meng Xie; Xiaofeng Cao; Bin Yu; Marja Timmermans; Bing Yang; Xuemei Chen; Blake C Meyers
Journal:  Plant Cell       Date:  2013-07-09       Impact factor: 11.277

Review 3.  Circulating free xeno-microRNAs - The new kids on the block.

Authors:  Linda Fabris; George Adrian Calin
Journal:  Mol Oncol       Date:  2016-01-21       Impact factor: 6.603

Review 4.  The 'how' and 'where' of plant microRNAs.

Authors:  Yu Yu; Tianran Jia; Xuemei Chen
Journal:  New Phytol       Date:  2017-10-19       Impact factor: 10.151

Review 5.  MiRNA fine tuning for crop improvement: using advance computational models and biotechnological tools.

Authors:  Asad Abbas; Adnan Noor Shah; Mohsin Tanveer; Waseem Ahmed; Anis Ali Shah; Sajid Fiaz; Muhammad Mohsin Waqas; Sami Ullah
Journal:  Mol Biol Rep       Date:  2022-02-19       Impact factor: 2.742

6.  Deep sequencing shows multiple oligouridylations are required for 3' to 5' degradation of histone mRNAs on polyribosomes.

Authors:  Michael K Slevin; Stacie Meaux; Joshua D Welch; Rebecca Bigler; Paula L Miliani de Marval; Wei Su; Robert E Rhoads; Jan F Prins; William F Marzluff
Journal:  Mol Cell       Date:  2014-03-20       Impact factor: 17.970

Review 7.  Nucleic Acid Modifications in Regulation of Gene Expression.

Authors:  Kai Chen; Boxuan Simen Zhao; Chuan He
Journal:  Cell Chem Biol       Date:  2016-01-21       Impact factor: 8.116

8.  Methylation protects microRNAs from an AGO1-associated activity that uridylates 5' RNA fragments generated by AGO1 cleavage.

Authors:  Guodong Ren; Meng Xie; Shuxin Zhang; Carissa Vinovskis; Xuemei Chen; Bin Yu
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-14       Impact factor: 11.205

9.  Prevalent cytidylation and uridylation of precursor miRNAs in Arabidopsis.

Authors:  Jianbo Song; Xiaoyan Wang; Bo Song; Lei Gao; Xiaowei Mo; Luming Yue; Haiqi Yang; Jiayun Lu; Guodong Ren; Beixin Mo; Xuemei Chen
Journal:  Nat Plants       Date:  2019-12-02       Impact factor: 15.793

Review 10.  microRNA biogenesis and turnover in plants.

Authors:  K Rogers; X Chen
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2013-02-25
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