Literature DB >> 15705854

Methylation as a crucial step in plant microRNA biogenesis.

Bin Yu1, Zhiyong Yang, Junjie Li, Svetlana Minakhina, Maocheng Yang, Richard W Padgett, Ruth Steward, Xuemei Chen.   

Abstract

Methylation on the base or the ribose is prevalent in eukaryotic ribosomal RNAs (rRNAs) and is thought to be crucial for ribosome biogenesis and function. Artificially introduced 2'-O-methyl groups in small interfering RNAs (siRNAs) can stabilize siRNAs in serum without affecting their activities in RNA interference in mammalian cells. Here, we show that plant microRNAs (miRNAs) have a naturally occurring methyl group on the ribose of the last nucleotide. Whereas methylation of rRNAs depends on guide RNAs, the methyltransferase protein HEN1 is sufficient to methylate miRNA/miRNA* duplexes. Our studies uncover a new and crucial step in plant miRNA biogenesis and have profound implications in the function of miRNAs.

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Year:  2005        PMID: 15705854      PMCID: PMC5137370          DOI: 10.1126/science.1107130

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  15 in total

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Authors:  G Hutvágner; J McLachlan; A E Pasquinelli; E Bálint; T Tuschl; P D Zamore
Journal:  Science       Date:  2001-07-12       Impact factor: 47.728

2.  Comparative genomics and evolution of proteins involved in RNA metabolism.

Authors:  Vivek Anantharaman; Eugene V Koonin; L Aravind
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

Review 3.  MicroRNAs: genomics, biogenesis, mechanism, and function.

Authors:  David P Bartel
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

4.  A biochemical framework for RNA silencing in plants.

Authors:  Guiliang Tang; Brenda J Reinhart; David P Bartel; Phillip D Zamore
Journal:  Genes Dev       Date:  2003-01-01       Impact factor: 11.361

Review 5.  MicroRNAs: something important between the genes.

Authors:  Allison C Mallory; Hervé Vaucheret
Journal:  Curr Opin Plant Biol       Date:  2004-04       Impact factor: 7.834

6.  Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance.

Authors:  P Mourrain; C Béclin; T Elmayan; F Feuerbach; C Godon; J B Morel; D Jouette; A M Lacombe; S Nikic; N Picault; K Rémoué; M Sanial; T A Vo; H Vaucheret
Journal:  Cell       Date:  2000-05-26       Impact factor: 41.582

7.  In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA.

Authors:  Eneida Abreu Parizotto; Patrice Dunoyer; Nadia Rahm; Christophe Himber; Olivier Voinnet
Journal:  Genes Dev       Date:  2004-09-01       Impact factor: 11.361

8.  Incorporation of terminal phosphorothioates into oligonucleotides.

Authors:  S Alefelder; B K Patel; F Eckstein
Journal:  Nucleic Acids Res       Date:  1998-11-01       Impact factor: 16.971

9.  Arabidopsis HEN1: a genetic link between endogenous miRNA controlling development and siRNA controlling transgene silencing and virus resistance.

Authors:  Stéphanie Boutet; Franck Vazquez; Jun Liu; Christophe Béclin; Mathilde Fagard; Ariane Gratias; Jean Benoit Morel; Patrice Crété; Xuemei Chen; Hervé Vaucheret
Journal:  Curr Biol       Date:  2003-05-13       Impact factor: 10.834

10.  Genetic and functional diversification of small RNA pathways in plants.

Authors:  Zhixin Xie; Lisa K Johansen; Adam M Gustafson; Kristin D Kasschau; Andrew D Lellis; Daniel Zilberman; Steven E Jacobsen; James C Carrington
Journal:  PLoS Biol       Date:  2004-02-24       Impact factor: 8.029

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  404 in total

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Journal:  Cell Res       Date:  2011-09-20       Impact factor: 25.617

2.  Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs.

Authors:  Jakub O Westholm; Erik Ladewig; Katsutomo Okamura; Nicolas Robine; Eric C Lai
Journal:  RNA       Date:  2011-12-21       Impact factor: 4.942

Review 3.  Dicing bodies.

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Journal:  Plant Physiol       Date:  2011-10-24       Impact factor: 8.340

4.  Plant secondary siRNA production determined by microRNA-duplex structure.

Authors:  Pablo A Manavella; Daniel Koenig; Detlef Weigel
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

Review 5.  Argonaute and the nuclear RNAs: new pathways for RNA-mediated control of gene expression.

Authors:  Keith T Gagnon; David R Corey
Journal:  Nucleic Acid Ther       Date:  2012-01-27       Impact factor: 5.486

Review 6.  Regulation of small RNA stability: methylation and beyond.

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Journal:  Cell Res       Date:  2012-03-13       Impact factor: 25.617

Review 7.  The regulatory activities of plant microRNAs: a more dynamic perspective.

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Journal:  Plant Physiol       Date:  2011-10-14       Impact factor: 8.340

Review 8.  Non-coding RNAs in the plant response to abiotic stress.

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Journal:  Planta       Date:  2012-07-04       Impact factor: 4.116

9.  Kinetic and functional analysis of the small RNA methyltransferase HEN1: the catalytic domain is essential for preferential modification of duplex RNA.

Authors:  Giedrius Vilkaitis; Alexandra Plotnikova; Saulius Klimasauskas
Journal:  RNA       Date:  2010-08-12       Impact factor: 4.942

10.  An endogenous, systemic RNAi pathway in plants.

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Journal:  EMBO J       Date:  2010-04-22       Impact factor: 11.598

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