Literature DB >> 35182321

MiRNA fine tuning for crop improvement: using advance computational models and biotechnological tools.

Asad Abbas1, Adnan Noor Shah2, Mohsin Tanveer3, Waseem Ahmed4, Anis Ali Shah5, Sajid Fiaz6, Muhammad Mohsin Waqas7, Sami Ullah8.   

Abstract

MiRNAs modulate target genes expression at post-transcriptional levels, by reducing spatial abundance of mRNAs. MiRNAs regulats plant metabolism, and emerged as regulators of plant stress responses. Which make miRNAs promising candidates for fine tuning to affectively alter crop stress tolerance and other important traits. With recent advancements in the computational biology and biotechnology miRNAs structure and target prediction is possible resulting in pin point editing; miRNA modulation can be done by up or down regulating miRNAs using recently available biotechnological tools (CRISPR Cas9, TALENS and RNAi). In this review we have focused on miRNA biogenesis, miRNA roles in plant development, plant stress responses and roles in signaling pathways. Additionally we have discussed latest computational prediction models for miRNA to target gene interaction and biotechnological systems used recently for miRNA modulation. We have also highlighted setbacks and limitations in the way of miRNA modulation; providing entirely a new direction for improvement in plant genomics primarily focusing miRNAs.
© 2022. The Author(s), under exclusive licence to Springer Nature B.V.

Entities:  

Keywords:  Biotechnological tools; Computational models; Crop stress tolerance; Fine tuning; MiRNA

Mesh:

Substances:

Year:  2022        PMID: 35182321     DOI: 10.1007/s11033-022-07231-5

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.742


  106 in total

Review 1.  Role of microRNAs in plant and animal development.

Authors:  James C Carrington; Victor Ambros
Journal:  Science       Date:  2003-07-18       Impact factor: 47.728

Review 2.  Evolution and functional diversification of MIRNA genes.

Authors:  Josh T Cuperus; Noah Fahlgren; James C Carrington
Journal:  Plant Cell       Date:  2011-02-11       Impact factor: 11.277

Review 3.  The energy cost of the tonoplast futile sodium leak.

Authors:  Sergey Shabala; Guang Chen; Zhong-Hua Chen; Igor Pottosin
Journal:  New Phytol       Date:  2019-03-30       Impact factor: 10.151

4.  Telling Footprints: Exon Junction Complexes Mark Targets of Nonsense- and miRNA-Mediated mRNA Decay.

Authors:  Hanna Hõrak
Journal:  Plant Cell       Date:  2020-02-12       Impact factor: 11.277

Review 5.  A parsimonious model for gene regulation by miRNAs.

Authors:  Sergej Djuranovic; Ali Nahvi; Rachel Green
Journal:  Science       Date:  2011-02-04       Impact factor: 47.728

6.  An extensive class of small RNAs in Caenorhabditis elegans.

Authors:  R C Lee; V Ambros
Journal:  Science       Date:  2001-10-26       Impact factor: 47.728

7.  RNA proximity sequencing reveals the spatial organization of the transcriptome in the nucleus.

Authors:  Jörg Morf; Steven W Wingett; Irene Farabella; Jonathan Cairns; Mayra Furlan-Magaril; Luis F Jiménez-García; Xin Liu; Frank F Craig; Simon Walker; Anne Segonds-Pichon; Simon Andrews; Marc A Marti-Renom; Peter Fraser
Journal:  Nat Biotechnol       Date:  2019-07-01       Impact factor: 54.908

8.  Origins and evolution of microRNA genes in plant species.

Authors:  Masafumi Nozawa; Sayaka Miura; Masatoshi Nei
Journal:  Genome Biol Evol       Date:  2012-01-04       Impact factor: 3.416

9.  Computational prediction of miRNAs and their targets in Phaseolus vulgaris using simple sequence repeat signatures.

Authors:  Chandran Nithin; Nisha Patwa; Amal Thomas; Ranjit Prasad Bahadur; Jolly Basak
Journal:  BMC Plant Biol       Date:  2015-06-12       Impact factor: 4.215

Review 10.  Functional Roles of microRNAs in Agronomically Important Plants-Potential as Targets for Crop Improvement and Protection.

Authors:  Arnaud T Djami-Tchatchou; Neeti Sanan-Mishra; Khayalethu Ntushelo; Ian A Dubery
Journal:  Front Plant Sci       Date:  2017-03-22       Impact factor: 5.753

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  2 in total

Review 1.  MicroRNA-mediated host defense mechanisms against pathogens and herbivores in rice: balancing gains from genetic resistance with trade-offs to productivity potential.

Authors:  Kishor Kumar; Swarupa Nanda Mandal; Kumari Neelam; Benildo G de Los Reyes
Journal:  BMC Plant Biol       Date:  2022-07-18       Impact factor: 5.260

2.  Genome-Wide Analysis of Invertase Gene Family, and Expression Profiling under Abiotic Stress Conditions in Potato.

Authors:  Asad Abbas; Adnan Noor Shah; Anis Ali Shah; Muhammad Azhar Nadeem; Ahmad Alsaleh; Talha Javed; Saqer S Alotaibi; Nader R Abdelsalam
Journal:  Biology (Basel)       Date:  2022-03-31
  2 in total

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