Literature DB >> 16144699

MicroRNA biogenesis and function in plants.

Xuemei Chen1.   

Abstract

A microRNA (miRNA) is a 21-24 nucleotide RNA product of a non-protein-coding gene. Plants, like animals, have a large number of miRNA-encoding genes in their genomes. The biogenesis of miRNAs in Arabidopsis is similar to that in animals in that miRNAs are processed from primary precursors by at least two steps mediated by RNAse III-like enzymes and that the miRNAs are incorporated into a protein complex named RISC. However, the biogenesis of plant miRNAs consists of an additional step, i.e., the miRNAs are methylated on the ribose of the last nucleotide by the miRNA methyltransferase HEN1. The high degree of sequence complementarity between plant miRNAs and their target mRNAs has facilitated the bioinformatic prediction of miRNA targets, many of which have been subsequently validated. Plant miRNAs have been predicted or confirmed to regulate a variety of processes, such as development, metabolism, and stress responses. A large category of miRNA targets consists of genes encoding transcription factors that play important roles in patterning the plant form.

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Year:  2005        PMID: 16144699      PMCID: PMC5127707          DOI: 10.1016/j.febslet.2005.07.071

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  110 in total

1.  A species of small antisense RNA in posttranscriptional gene silencing in plants.

Authors:  A J Hamilton; D C Baulcombe
Journal:  Science       Date:  1999-10-29       Impact factor: 47.728

2.  A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA.

Authors:  G Hutvágner; J McLachlan; A E Pasquinelli; E Bálint; T Tuschl; P D Zamore
Journal:  Science       Date:  2001-07-12       Impact factor: 47.728

3.  The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans.

Authors:  B J Reinhart; F J Slack; M Basson; A E Pasquinelli; J C Bettinger; A E Rougvie; H R Horvitz; G Ruvkun
Journal:  Nature       Date:  2000-02-24       Impact factor: 49.962

4.  An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus.

Authors:  T Dalmay; A Hamilton; S Rudd; S Angell; D C Baulcombe
Journal:  Cell       Date:  2000-05-26       Impact factor: 41.582

5.  Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance.

Authors:  P Mourrain; C Béclin; T Elmayan; F Feuerbach; C Godon; J B Morel; D Jouette; A M Lacombe; S Nikic; N Picault; K Rémoué; M Sanial; T A Vo; H Vaucheret
Journal:  Cell       Date:  2000-05-26       Impact factor: 41.582

6.  REVOLUTA regulates meristem initiation at lateral positions.

Authors:  D Otsuga; B DeGuzman; M J Prigge; G N Drews; S E Clark
Journal:  Plant J       Date:  2001-01       Impact factor: 6.417

7.  Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots.

Authors:  J R McConnell; J Emery; Y Eshed; N Bao; J Bowman; M K Barton
Journal:  Nature       Date:  2001-06-07       Impact factor: 49.962

8.  KANADI regulates organ polarity in Arabidopsis.

Authors:  R A Kerstetter; K Bollman; R A Taylor; K Bomblies; R S Poethig
Journal:  Nature       Date:  2001-06-07       Impact factor: 49.962

9.  The CUP-SHAPED COTYLEDON1 gene of Arabidopsis regulates shoot apical meristem formation.

Authors:  S Takada; K Hibara; T Ishida; M Tasaka
Journal:  Development       Date:  2001-04       Impact factor: 6.868

10.  Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems.

Authors:  S E Jacobsen; M P Running; E M Meyerowitz
Journal:  Development       Date:  1999-12       Impact factor: 6.868

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  169 in total

1.  Exogenous plant MIR168a specifically targets mammalian LDLRAP1: evidence of cross-kingdom regulation by microRNA.

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Journal:  Cell Res       Date:  2011-09-20       Impact factor: 25.617

2.  High-throughput sequencing discovery of conserved and novel microRNAs in Chinese cabbage (Brassica rapa L. ssp. pekinensis).

Authors:  Fengde Wang; Libin Li; Lifeng Liu; Huayin Li; Yihui Zhang; Yingyin Yao; Zhongfu Ni; Jianwei Gao
Journal:  Mol Genet Genomics       Date:  2012-05-29       Impact factor: 3.291

Review 3.  Exploration of small non coding RNAs in wheat (Triticum aestivum L.).

Authors:  Yingyin Yao; Qixin Sun
Journal:  Plant Mol Biol       Date:  2011-10-19       Impact factor: 4.076

4.  Illumina sequencing revealed roles of microRNAs in different aluminum tolerance of two citrus species.

Authors:  Yang-Fei Zhou; Yan-Yu Wang; Wei-Wei Chen; Li-Song Chen; Lin-Tong Yang
Journal:  Physiol Mol Biol Plants       Date:  2020-10-27

Review 5.  Short RNAs in environmental adaptation.

Authors:  Tamas Dalmay
Journal:  Proc Biol Sci       Date:  2006-07-07       Impact factor: 5.349

Review 6.  On the origin and functions of RNA-mediated silencing: from protists to man.

Authors:  Heriberto Cerutti; J Armando Casas-Mollano
Journal:  Curr Genet       Date:  2006-05-12       Impact factor: 3.886

7.  A structured viroid RNA serves as a substrate for dicer-like cleavage to produce biologically active small RNAs but is resistant to RNA-induced silencing complex-mediated degradation.

Authors:  Asuka Itaya; Xuehua Zhong; Ralf Bundschuh; Yijun Qi; Ying Wang; Ryuta Takeda; Ann R Harris; Carlos Molina; Richard S Nelson; Biao Ding
Journal:  J Virol       Date:  2007-01-03       Impact factor: 5.103

8.  Detection and evolutionary analysis of soybean miRNAs responsive to soybean mosaic virus.

Authors:  Xianchao Yin; Jiao Wang; Hao Cheng; Xiaolin Wang; Deyue Yu
Journal:  Planta       Date:  2013-01-18       Impact factor: 4.116

9.  Identification of soybean microRNAs and their targets.

Authors:  Baohong Zhang; Xiaoping Pan; Edmund J Stellwag
Journal:  Planta       Date:  2008-09-25       Impact factor: 4.116

10.  NOT2 proteins promote polymerase II-dependent transcription and interact with multiple MicroRNA biogenesis factors in Arabidopsis.

Authors:  Lulu Wang; Xianwei Song; Lianfeng Gu; Xin Li; Shouyun Cao; Chengcai Chu; Xia Cui; Xuemei Chen; Xiaofeng Cao
Journal:  Plant Cell       Date:  2013-02-19       Impact factor: 11.277

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