Literature DB >> 29048752

The 'how' and 'where' of plant microRNAs.

Yu Yu1, Tianran Jia1, Xuemei Chen1,2.   

Abstract

Contents 1002 I. 1002 II. 1007 III. 1010 IV. 1013 1013 References 1013
SUMMARY: MicroRNAs (miRNAs) are small non-coding RNAs, of typically 20-24 nt, that regulate gene expression post-transcriptionally through sequence complementarity. Since the identification of the first miRNA, lin-4, in the nematode Caenorhabditis elegans in 1993, thousands of miRNAs have been discovered in animals and plants, and their regulatory roles in numerous biological processes have been uncovered. In plants, research efforts have established the major molecular framework of miRNA biogenesis and modes of action, and are beginning to elucidate the mechanisms of miRNA degradation. Studies have implicated restricted and surprising subcellular locations in which miRNA biogenesis or activity takes place. In this article, we summarize the current knowledge on how plant miRNAs are made and degraded, and how they repress target gene expression. We discuss not only the players involved in these processes, but also the subcellular sites in which these processes are known or implicated to take place. We hope to raise awareness that the cell biology of miRNAs holds the key to a full understanding of these enigmatic molecules.
© 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

Entities:  

Keywords:  ARGONAUTE1; DICER-LIKE1; HYPONASTIC LEAVES 1; dicing body; endoplasmic reticulum (ER); membrane-bound polysome; microRNA; phased small interfering RNA

Mesh:

Substances:

Year:  2017        PMID: 29048752      PMCID: PMC6040672          DOI: 10.1111/nph.14834

Source DB:  PubMed          Journal:  New Phytol        ISSN: 0028-646X            Impact factor:   10.151


  180 in total

1.  SERRATE: a new player on the plant microRNA scene.

Authors:  Dajana Lobbes; Ghanasyam Rallapalli; Dominik D Schmidt; Cathie Martin; Jonathan Clarke
Journal:  EMBO Rep       Date:  2006-09-15       Impact factor: 8.807

2.  MicroRNA promoter element discovery in Arabidopsis.

Authors:  Molly Megraw; Vesselin Baev; Ventsislav Rusinov; Shane T Jensen; Kriton Kalantidis; Artemis G Hatzigeorgiou
Journal:  RNA       Date:  2006-08-03       Impact factor: 4.942

3.  The miRNA156/157 recognition element in the 3' UTR of the Arabidopsis SBP box gene SPL3 prevents early flowering by translational inhibition in seedlings.

Authors:  Madhuri Gandikota; Rainer P Birkenbihl; Susanne Höhmann; Guillermo H Cardon; Heinz Saedler; Peter Huijser
Journal:  Plant J       Date:  2007-01-08       Impact factor: 6.417

4.  Structural basis for double-stranded RNA processing by Dicer.

Authors:  Ian J Macrae; Kaihong Zhou; Fei Li; Adrian Repic; Angela N Brooks; W Zacheus Cande; Paul D Adams; Jennifer A Doudna
Journal:  Science       Date:  2006-01-13       Impact factor: 47.728

5.  Global Analysis of Truncated RNA Ends Reveals New Insights into Ribosome Stalling in Plants.

Authors:  Cheng-Yu Hou; Wen-Chi Lee; Hsiao-Chun Chou; Ai-Ping Chen; Shu-Jen Chou; Ho-Ming Chen
Journal:  Plant Cell       Date:  2016-10-14       Impact factor: 11.277

6.  The mechanism selecting the guide strand from small RNA duplexes is different among argonaute proteins.

Authors:  Atsushi Takeda; Shintaro Iwasaki; Toshiaki Watanabe; Maki Utsumi; Yuichiro Watanabe
Journal:  Plant Cell Physiol       Date:  2008-03-14       Impact factor: 4.927

7.  The Arabidopsis thaliana double-stranded RNA binding protein DRB1 directs guide strand selection from microRNA duplexes.

Authors:  Andrew L Eamens; Neil A Smith; Shaun J Curtin; Ming-Bo Wang; Peter M Waterhouse
Journal:  RNA       Date:  2009-10-27       Impact factor: 4.942

8.  AGO1 and AGO2 act redundantly in miR408-mediated Plantacyanin regulation.

Authors:  Nicolas Maunoury; Hervé Vaucheret
Journal:  PLoS One       Date:  2011-12-13       Impact factor: 3.240

9.  Degradation of cellular mir-27 by a novel, highly abundant viral transcript is important for efficient virus replication in vivo.

Authors:  Lisa Marcinowski; Mélanie Tanguy; Astrid Krmpotic; Bernd Rädle; Vanda J Lisnić; Lee Tuddenham; Béatrice Chane-Woon-Ming; Zsolt Ruzsics; Florian Erhard; Corinna Benkartek; Marina Babic; Ralf Zimmer; Joanne Trgovcich; Ulrich H Koszinowski; Stipan Jonjic; Sébastien Pfeffer; Lars Dölken
Journal:  PLoS Pathog       Date:  2012-02-09       Impact factor: 6.823

10.  Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis.

Authors:  Tino Köster; Katja Meyer; Claus Weinholdt; Lisa M Smith; Martina Lummer; Corinna Speth; Ivo Grosse; Detlef Weigel; Dorothee Staiger
Journal:  Nucleic Acids Res       Date:  2014-08-07       Impact factor: 16.971

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  108 in total

1.  Transcriptome-wide identification of miRNA targets and a TAS3-homologous gene in Populus by degradome sequencing.

Authors:  Hai Bao; Min Chen; Hui Chen; Liang Du; Yanwei Wang
Journal:  Genes Genomics       Date:  2019-03-25       Impact factor: 1.839

Review 2.  Regulation of pri-MIRNA processing: mechanistic insights into the miRNA homeostasis in plant.

Authors:  Jayanti Jodder
Journal:  Plant Cell Rep       Date:  2021-01-16       Impact factor: 4.570

Review 3.  RNA uridylation and decay in plants.

Authors:  Caroline de Almeida; Hélène Scheer; Anthony Gobert; Veronica Fileccia; Federico Martinelli; Hélène Zuber; Dominique Gagliardi
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-05       Impact factor: 6.237

4.  Template-switching mechanism of a group II intron-encoded reverse transcriptase and its implications for biological function and RNA-Seq.

Authors:  Alfred M Lentzsch; Jun Yao; Rick Russell; Alan M Lambowitz
Journal:  J Biol Chem       Date:  2019-11-11       Impact factor: 5.157

5.  Novel miRNA identification and comparative profiling of miRNA regulations revealed important pathways in Jinding duck ovaries by small RNA sequencing.

Authors:  Chaowu Yang; Xia Xiong; Xiaosong Jiang; Huarui Du; Qingyun Li; Hehe Liu; Wu Gan; Chunlin Yu; Han Peng; Bo Xia; Jialei Chen; Xiaoyan Song; Li Yang; Chenming Hu; Mohan Qiu; Zengrong Zhang
Journal:  3 Biotech       Date:  2020-01-08       Impact factor: 2.406

6.  Organellar and Secretory Ribonucleases: Major Players in Plant RNA Homeostasis.

Authors:  Gustavo C MacIntosh; Benoît Castandet
Journal:  Plant Physiol       Date:  2020-06-08       Impact factor: 8.340

Review 7.  Plant Noncoding RNAs: Hidden Players in Development and Stress Responses.

Authors:  Yu Yu; Yuchan Zhang; Xuemei Chen; Yueqin Chen
Journal:  Annu Rev Cell Dev Biol       Date:  2019-08-12       Impact factor: 13.827

8.  Magnaporthe oryzae Induces the Expression of a MicroRNA to Suppress the Immune Response in Rice.

Authors:  Xin Zhang; Yalin Bao; Deqi Shan; Zhihui Wang; Xiaoning Song; Zhaoyun Wang; Jiansheng Wang; Liqiang He; Liang Wu; Zhengguang Zhang; Dongdong Niu; Hailing Jin; Hongwei Zhao
Journal:  Plant Physiol       Date:  2018-03-16       Impact factor: 8.340

9.  Plant Extracellular Vesicles Contain Diverse Small RNA Species and Are Enriched in 10- to 17-Nucleotide "Tiny" RNAs.

Authors:  Patricia Baldrich; Brian D Rutter; Hana Zand Karimi; Ram Podicheti; Blake C Meyers; Roger W Innes
Journal:  Plant Cell       Date:  2019-01-31       Impact factor: 11.277

10.  Primary transcript of miR858 encodes regulatory peptide and controls flavonoid biosynthesis and development in Arabidopsis.

Authors:  Ashish Sharma; Poorwa Kamal Badola; Chitra Bhatia; Deepika Sharma; Prabodh Kumar Trivedi
Journal:  Nat Plants       Date:  2020-09-21       Impact factor: 15.793

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