Literature DB >> 23881412

Biogenesis, turnover, and mode of action of plant microRNAs.

Kestrel Rogers1, Xuemei Chen.   

Abstract

MicroRNAs (miRNAs) are small RNAs that control gene expression through silencing of target mRNAs. Mature miRNAs are processed from primary miRNA transcripts by the endonuclease activity of the DICER-LIKE1 (DCL1) protein complex. Mechanisms exist that allow the DCL1 complex to precisely excise the miRNA from its precursor. Our understanding of miRNA biogenesis, particularly its intersection with transcription and other aspects of RNA metabolism such as splicing, is still evolving. Mature miRNAs are incorporated into an ARGONAUTE (AGO) effector complex competent for target gene silencing but are also subjected to turnover through a degradation mechanism that is beginning to be understood. The mechanisms of miRNA target silencing in plants are no longer limited to AGO-catalyzed slicing, and the contribution of translational inhibition is increasingly appreciated. Here, we review the mechanisms underlying the biogenesis, turnover, and activities of plant miRNAs.

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Year:  2013        PMID: 23881412      PMCID: PMC3753372          DOI: 10.1105/tpc.113.113159

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  221 in total

Review 1.  P bodies: at the crossroads of post-transcriptional pathways.

Authors:  Ana Eulalio; Isabelle Behm-Ansmant; Elisa Izaurralde
Journal:  Nat Rev Mol Cell Biol       Date:  2007-01       Impact factor: 94.444

2.  Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome.

Authors:  Sascha Laubinger; Georg Zeller; Stefan R Henz; Sabine Buechel; Timo Sachsenberg; Jia-Wei Wang; Gunnar Rätsch; Detlef Weigel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-24       Impact factor: 11.205

3.  Plant stress granules and mRNA processing bodies are distinct from heat stress granules.

Authors:  Christian Weber; Lutz Nover; Markus Fauth
Journal:  Plant J       Date:  2008-08-06       Impact factor: 6.417

4.  Orchestration of the floral transition and floral development in Arabidopsis by the bifunctional transcription factor APETALA2.

Authors:  Levi Yant; Johannes Mathieu; Thanh Theresa Dinh; Felix Ott; Christa Lanz; Heike Wollmann; Xuemei Chen; Markus Schmid
Journal:  Plant Cell       Date:  2010-07-30       Impact factor: 11.277

5.  Kinetic analysis reveals successive steps leading to miRNA-mediated silencing in mammalian cells.

Authors:  Julien Béthune; Caroline G Artus-Revel; Witold Filipowicz
Journal:  EMBO Rep       Date:  2012-06-08       Impact factor: 8.807

6.  The mechanism selecting the guide strand from small RNA duplexes is different among argonaute proteins.

Authors:  Atsushi Takeda; Shintaro Iwasaki; Toshiaki Watanabe; Maki Utsumi; Yuichiro Watanabe
Journal:  Plant Cell Physiol       Date:  2008-03-14       Impact factor: 4.927

7.  Crystal structure of Arabidopsis thaliana Dawdle forkhead-associated domain reveals a conserved phospho-threonine recognition cleft for dicer-like 1 binding.

Authors:  Satoru Machida; Y Adam Yuan
Journal:  Mol Plant       Date:  2013-01-11       Impact factor: 13.164

8.  The Arabidopsis thaliana double-stranded RNA binding protein DRB1 directs guide strand selection from microRNA duplexes.

Authors:  Andrew L Eamens; Neil A Smith; Shaun J Curtin; Ming-Bo Wang; Peter M Waterhouse
Journal:  RNA       Date:  2009-10-27       Impact factor: 4.942

9.  AGO1 and AGO2 act redundantly in miR408-mediated Plantacyanin regulation.

Authors:  Nicolas Maunoury; Hervé Vaucheret
Journal:  PLoS One       Date:  2011-12-13       Impact factor: 3.240

10.  Silencing by small RNAs is linked to endosomal trafficking.

Authors:  Young Sik Lee; Sigal Pressman; Arlise P Andress; Kevin Kim; Jamie L White; Justin J Cassidy; Xin Li; Kim Lubell; Do Hwan Lim; Ik Sang Cho; Kenji Nakahara; Jonathan B Preall; Priya Bellare; Erik J Sontheimer; Richard W Carthew
Journal:  Nat Cell Biol       Date:  2009-08-16       Impact factor: 28.824

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  326 in total

Review 1.  miRNA-encoded peptides (miPEPs): A new tool to analyze the roles of miRNAs in plant biology.

Authors:  Jean-Malo Couzigou; Dominique Lauressergues; Guillaume Bécard; Jean-Philippe Combier
Journal:  RNA Biol       Date:  2015-09-23       Impact factor: 4.652

2.  A Dicer-Independent Route for Biogenesis of siRNAs that Direct DNA Methylation in Arabidopsis.

Authors:  Ruiqiang Ye; Zulong Chen; Bi Lian; M Jordan Rowley; Ning Xia; Jijie Chai; Yan Li; Xin-Jian He; Andrzej T Wierzbicki; Yijun Qi
Journal:  Mol Cell       Date:  2015-12-17       Impact factor: 17.970

Review 3.  RNAi in Plants: An Argonaute-Centered View.

Authors:  Xiaofeng Fang; Yijun Qi
Journal:  Plant Cell       Date:  2016-02-11       Impact factor: 11.277

4.  The plant cell reviews aspects of microRNA and PhasiRNA regulatory function.

Authors:  Nancy A Eckardt
Journal:  Plant Cell       Date:  2013-07-29       Impact factor: 11.277

5.  Trip to ER: MicroRNA-mediated translational repression in plants.

Authors:  Xuan Ma; Xiaofeng Cao; Beixin Mo; Xuemei Chen
Journal:  RNA Biol       Date:  2013-09-10       Impact factor: 4.652

6.  Transcriptome Profiling of Wheat Inflorescence Development from Spikelet Initiation to Floral Patterning Identified Stage-Specific Regulatory Genes.

Authors:  Nan Feng; Gaoyuan Song; Jiantao Guan; Kai Chen; Meiling Jia; Dehua Huang; Jiajie Wu; Lichao Zhang; Xiuying Kong; Shuaifeng Geng; Jun Liu; Aili Li; Long Mao
Journal:  Plant Physiol       Date:  2017-05-17       Impact factor: 8.340

7.  The miR164-dependent regulatory pathway in developing maize seed.

Authors:  Lanjie Zheng; Xiangge Zhang; Haojun Zhang; Yong Gu; Xinrong Huang; Huanhuan Huang; Hanmei Liu; Junjie Zhang; Yufeng Hu; Yangping Li; Guowu Yu; Yinghong Liu; Shaneka S Lawson; Yubi Huang
Journal:  Mol Genet Genomics       Date:  2019-01-03       Impact factor: 3.291

8.  Highly preserved roles of Brassica MIR172 in polyploid Brassicas: ectopic expression of variants of Brassica MIR172 accelerates floral transition.

Authors:  S M Shivaraj; Aditi Jain; Anandita Singh
Journal:  Mol Genet Genomics       Date:  2018-05-11       Impact factor: 3.291

9.  Identification of AGO3-associated miRNAs and computational prediction of their targets in the green alga Chlamydomonas reinhardtii.

Authors:  Adam Voshall; Eun-Jeong Kim; Xinrong Ma; Etsuko N Moriyama; Heriberto Cerutti
Journal:  Genetics       Date:  2015-03-13       Impact factor: 4.562

10.  TRANSPORTIN1 Promotes the Association of MicroRNA with ARGONAUTE1 in Arabidopsis.

Authors:  Yuwei Cui; Xiaofeng Fang; Yijun Qi
Journal:  Plant Cell       Date:  2016-09-23       Impact factor: 11.277

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