Literature DB >> 23439913

microRNA biogenesis and turnover in plants.

K Rogers1, X Chen.   

Abstract

microRNAs (miRNAs) are short RNAs that regulate gene expression in eukaryotes. The biogenesis and turnover of miRNAs determine their spatiotemporal accumulation within tissues. miRNA biogenesis is a multistep process that entails transcription, processing, nuclear export, and formation of the miRNA-ARGONAUTE complex. Factors that perform each of these steps have been identified. Generation of mature miRNAs from primary transcripts, i.e., miRNA processing, is a key step in miRNA biogenesis. Our understanding of miRNA processing has expanded beyond the enzyme that performs the reactions, as more and more additional factors that impact the efficiency and accuracy of miRNA processing are uncovered. In contrast to miRNA biogenesis, miRNA turnover is an important but poorly understood process that contributes to the steady-state levels of miRNAs. Enzymes responsible for miRNA degradation have only recently been identified. This review describes the processes of miRNA maturation and degradation in plants.

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Year:  2013        PMID: 23439913      PMCID: PMC5127710          DOI: 10.1101/sqb.2013.77.014530

Source DB:  PubMed          Journal:  Cold Spring Harb Symp Quant Biol        ISSN: 0091-7451


  134 in total

Review 1.  Evolution of plant microRNA gene families.

Authors:  Aili Li; Long Mao
Journal:  Cell Res       Date:  2007-03       Impact factor: 25.617

2.  Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development.

Authors:  Hongliang Zhu; Fuqu Hu; Ronghui Wang; Xin Zhou; Sing-Hoi Sze; Lisa Wen Liou; Ashley Barefoot; Martin Dickman; Xiuren Zhang
Journal:  Cell       Date:  2011-04-15       Impact factor: 41.582

3.  Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome.

Authors:  Julia A Chekanova; Brian D Gregory; Sergei V Reverdatto; Huaming Chen; Ravi Kumar; Tanya Hooker; Junshi Yazaki; Pinghua Li; Nikolai Skiba; Qian Peng; Jose Alonso; Vladimir Brukhin; Ueli Grossniklaus; Joseph R Ecker; Dmitry A Belostotsky
Journal:  Cell       Date:  2007-12-28       Impact factor: 41.582

4.  Identification of microRNA processing determinants by random mutagenesis of Arabidopsis MIR172a precursor.

Authors:  Julieta L Mateos; Nicolás G Bologna; Uciel Chorostecki; Javier F Palatnik
Journal:  Curr Biol       Date:  2009-12-10       Impact factor: 10.834

5.  An importin β protein negatively regulates MicroRNA activity in Arabidopsis.

Authors:  Wei Wang; Ruiqiang Ye; Ying Xin; Xiaofeng Fang; Chunlian Li; Huiqing Shi; Xueping Zhou; Yijun Qi
Journal:  Plant Cell       Date:  2011-10-07       Impact factor: 11.277

6.  Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs.

Authors:  N Baumberger; D C Baulcombe
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-04       Impact factor: 11.205

7.  R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway.

Authors:  Qinghua Liu; Tim A Rand; Savitha Kalidas; Fenghe Du; Hyun-Eui Kim; Dean P Smith; Xiaodong Wang
Journal:  Science       Date:  2003-09-26       Impact factor: 47.728

8.  Cyclophilin 40 is required for microRNA activity in Arabidopsis.

Authors:  Michael R Smith; Matthew R Willmann; Gang Wu; Tanya Z Berardini; Barbara Möller; Dolf Weijers; R Scott Poethig
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-16       Impact factor: 11.205

9.  A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159.

Authors:  Nicolás G Bologna; Julieta L Mateos; Edgardo G Bresso; Javier F Palatnik
Journal:  EMBO J       Date:  2009-10-08       Impact factor: 11.598

10.  HEN1 functions pleiotropically in Arabidopsis development and acts in C function in the flower.

Authors:  Xuemei Chen; Jun Liu; Yulan Cheng; Dongxuan Jia
Journal:  Development       Date:  2002-03       Impact factor: 6.868

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  12 in total

Review 1.  The role of miRNA in plant-virus interaction: a review.

Authors:  Anteneh Ademe Mengistu; Tesfaye Alemu Tenkegna
Journal:  Mol Biol Rep       Date:  2021-03-26       Impact factor: 2.316

2.  The Intrinsically Disordered Protein CARP9 Bridges HYL1 to AGO1 in the Nucleus to Promote MicroRNA Activity.

Authors:  Ariel H Tomassi; Delfina A Re; Facundo Romani; Damian A Cambiagno; Lucía Gonzalo; Javier E Moreno; Agustin L Arce; Pablo A Manavella
Journal:  Plant Physiol       Date:  2020-07-07       Impact factor: 8.340

Review 3.  RNA Quality Control as a Key to Suppressing RNA Silencing of Endogenous Genes in Plants.

Authors:  Lin Liu; Xuemei Chen
Journal:  Mol Plant       Date:  2016-03-30       Impact factor: 13.164

Review 4.  Complexity of the alternative splicing landscape in plants.

Authors:  Anireddy S N Reddy; Yamile Marquez; Maria Kalyna; Andrea Barta
Journal:  Plant Cell       Date:  2013-10-31       Impact factor: 11.277

5.  Targeting alternative splicing by RNAi: from the differential impact on splice variants to triggering artificial pre-mRNA splicing.

Authors:  Armin Fuchs; Stefan Riegler; Zahra Ayatollahi; Nicola Cavallari; Luciana E Giono; Barbara A Nimeth; Krishna V Mutanwad; Alois Schweighofer; Doris Lucyshyn; Andrea Barta; Ezequiel Petrillo; Maria Kalyna
Journal:  Nucleic Acids Res       Date:  2021-01-25       Impact factor: 19.160

6.  A dynamic evolutionary and functional landscape of plant phased small interfering RNAs.

Authors:  Yi Zheng; Ying Wang; Jian Wu; Biao Ding; Zhangjun Fei
Journal:  BMC Biol       Date:  2015-05-16       Impact factor: 7.431

7.  Novel insights from non-conserved microRNAs in plants.

Authors:  Zhengrui Qin; Chunlian Li; Long Mao; Liang Wu
Journal:  Front Plant Sci       Date:  2014-10-28       Impact factor: 5.753

8.  Identification of microRNAs and relative target genes in Moringa oleifera leaf and callus.

Authors:  Stefano Pirrò; Ivana Matic; Arianna Guidi; Letizia Zanella; Angelo Gismondi; Rosella Cicconi; Roberta Bernardini; Vittorio Colizzi; Antonella Canini; Maurizio Mattei; Andrea Galgani
Journal:  Sci Rep       Date:  2019-10-22       Impact factor: 4.379

Review 9.  Plant Small Non-coding RNAs and Their Roles in Biotic Stresses.

Authors:  Eleanor J Brant; Hikmet Budak
Journal:  Front Plant Sci       Date:  2018-07-20       Impact factor: 5.753

10.  Post-transcriptional regulation of several biological processes involved in latex production in Hevea brasiliensis.

Authors:  Julie Leclercq; Shuangyang Wu; Benoît Farinas; Stéphanie Pointet; Bénédicte Favreau; Hélène Vignes; Kuswanhadi Kuswanhadi; Enrique Ortega-Abboud; Jean-François Dufayard; Shenghan Gao; Gaëtan Droc; Songnian Hu; Chaorong Tang; Pascal Montoro
Journal:  PeerJ       Date:  2020-04-29       Impact factor: 2.984

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