Literature DB >> 22339624

Growth rates of protein crystals.

Jeremy D Schmit1, Ken Dill.   

Abstract

Protein crystallization is important for structural biology. The rate at which a protein crystallizes is often the bottleneck in determining the protein's structure. Here, we give a physical model for the growth rates of protein crystals. Most materials crystallize faster under stronger growth conditions; however, protein crystallization slows down under the strongest conditions. Proteins require a crystallization slot of 'just right' conditions. Our model provides an explanation. Unlike simpler materials, proteins are orientationally asymmetrical. Under strong conditions, protein molecules attempt to crystallize too quickly, in wrong orientations, blocking surface sites for more productive crystal growth. The model explains the observation that increasing the net charge on a protein increases the crystal growth rate. The model predictions are in good agreement with experiments on the growth rates of tetragonal lysozyme crystals as a function of pH, salt concentration, temperature, and protein concentration.
© 2012 American Chemical Society

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Year:  2012        PMID: 22339624      PMCID: PMC3311159          DOI: 10.1021/ja207336r

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  10 in total

1.  The effect of temperature and solution pH on the nucleation of tetragonal lysozyme crystals.

Authors:  R A Judge; R S Jacobs; T Frazier; E H Snell; M L Pusey
Journal:  Biophys J       Date:  1999-09       Impact factor: 4.033

Review 2.  New strategies for protein crystal growth.

Authors:  J M Wiencek
Journal:  Annu Rev Biomed Eng       Date:  1999       Impact factor: 9.590

Review 3.  Models of protein crystal growth.

Authors:  A M Kierzek; P Zielenkiewicz
Journal:  Biophys Chem       Date:  2001-06-15       Impact factor: 2.352

4.  Predicting protein crystallization from a dilute solution property.

Authors:  A George; W W Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-07-01

5.  On the interpretation of quantitative experimental data on nucleation rates using classical nucleation theory.

Authors:  Richard P Sear
Journal:  J Phys Chem B       Date:  2006-11-02       Impact factor: 2.991

6.  A summary of the measured pK values of the ionizable groups in folded proteins.

Authors:  Gerald R Grimsley; J Martin Scholtz; C Nick Pace
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

7.  Electrostatics and aggregation: how charge can turn a crystal into a gel.

Authors:  Jeremy D Schmit; Stephen Whitelam; Ken Dill
Journal:  J Chem Phys       Date:  2011-08-28       Impact factor: 3.488

8.  Enhancement of protein crystal nucleation by critical density fluctuations.

Authors:  P R ten Wolde; D Frenkel
Journal:  Science       Date:  1997-09-26       Impact factor: 47.728

9.  The stabilities of protein crystals.

Authors:  Jeremy D Schmit; Ken A Dill
Journal:  J Phys Chem B       Date:  2010-03-25       Impact factor: 2.991

10.  High-resolution structure (1.33 A) of a HEW lysozyme tetragonal crystal grown in the APCF apparatus. Data and structural comparison with a crystal grown under microgravity from SpaceHab-01 mission.

Authors:  M C Vaney; S Maignan; M Riès-Kautt; A Ducriux
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-05-01
  10 in total
  9 in total

1.  A strategy for selecting the pH of protein solutions to enhance crystallization.

Authors:  Chen Yan Zhang; Zi Qing Wu; Da Chuan Yin; Bo Ru Zhou; Yun Zhu Guo; Hui Meng Lu; Ren Bin Zhou; Peng Shang
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-06-29

2.  Catalystlike role of impurities in speeding layer-by-layer growth.

Authors:  Tien M Phan; Stephen Whitelam; Jeremy D Schmit
Journal:  Phys Rev E       Date:  2019-10       Impact factor: 2.529

3.  Minimal physical requirements for crystal growth self-poisoning.

Authors:  Stephen Whitelam; Yuba Raj Dahal; Jeremy D Schmit
Journal:  J Chem Phys       Date:  2016-02-14       Impact factor: 3.488

4.  Characterizing protein crystal contacts and their role in crystallization: rubredoxin as a case study.

Authors:  Diana Fusco; Jeffrey J Headd; Alfonso De Simone; Jun Wang; Patrick Charbonneau
Journal:  Soft Matter       Date:  2014-01-14       Impact factor: 3.679

5.  Theory of Sequence Effects in Amyloid Aggregation.

Authors:  Caleb Huang; Elaheh Ghanati; Jeremy D Schmit
Journal:  J Phys Chem B       Date:  2018-03-09       Impact factor: 2.991

6.  An investigation of the effects of self-assembled monolayers on protein crystallisation.

Authors:  Chen-Yan Zhang; He-Fang Shen; Qian-Jin Wang; Yun-Zhu Guo; Jin He; Hui-Ling Cao; Yong-Ming Liu; Peng Shang; Da-Chuan Yin
Journal:  Int J Mol Sci       Date:  2013-06-07       Impact factor: 5.923

7.  Room-temperature serial crystallography using a kinetically optimized microfluidic device for protein crystallization and on-chip X-ray diffraction.

Authors:  Michael Heymann; Achini Opthalage; Jennifer L Wierman; Sathish Akella; Doletha M E Szebenyi; Sol M Gruner; Seth Fraden
Journal:  IUCrJ       Date:  2014-08-25       Impact factor: 4.769

8.  The "speed limit" for macromolecular crystal growth.

Authors:  Renee J Arias; Jens T Kaiser; Douglas C Rees
Journal:  Protein Sci       Date:  2018-10-16       Impact factor: 6.725

9.  Unraveling the Impact of pH on the Crystallization of Pharmaceutical Proteins: A Case Study of Human Insulin.

Authors:  Frederik J Link; Jerry Y Y Heng
Journal:  Cryst Growth Des       Date:  2022-04-12       Impact factor: 4.010

  9 in total

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