Literature DB >> 23832217

A strategy for selecting the pH of protein solutions to enhance crystallization.

Chen Yan Zhang1, Zi Qing Wu, Da Chuan Yin, Bo Ru Zhou, Yun Zhu Guo, Hui Meng Lu, Ren Bin Zhou, Peng Shang.   

Abstract

The pH of a solution is an important parameter in crystallization that needs to be controlled in order to ensure success. The actual pH of the crystallization droplet is determined by the combined contribution of the buffers in the screening and protein solutions, although the contribution of the latter to the pH is often ignored. In this study, the effects of the buffer and protein solution pH values on the results of screening are systematically investigated. It was found that these parameters significantly affected the results and thus the following strategy for the selection of appropriate pH values is proposed: (i) when screening with only one protein solution, the pH should be as low, as high or as divergent from the pI as possible for a basic, acidic or neutral protein, respectively, within its stable pH range; (ii) when screening with two protein solutions, the pH values should be well separated from one another; and (iii) when multiple pH values are utilized, an even distribution of pH values is the best approach to increase the success rate of crystallization.

Keywords:  crystallization screening; pH; protein crystallization

Mesh:

Substances:

Year:  2013        PMID: 23832217      PMCID: PMC3702334          DOI: 10.1107/S1744309113013651

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  20 in total

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2.  Novel buffer systems for macromolecular crystallization.

Authors:  Janet Newman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-02-25

Review 3.  Methods for separating nucleation and growth in protein crystallisation.

Authors:  Naomi E Chayen
Journal:  Prog Biophys Mol Biol       Date:  2005-07       Impact factor: 3.667

4.  Thermofluor-based high-throughput stability optimization of proteins for structural studies.

Authors:  Ulrika B Ericsson; B Martin Hallberg; George T Detitta; Niek Dekker; Pär Nordlund
Journal:  Anal Biochem       Date:  2006-08-10       Impact factor: 3.365

5.  One plate, two plates, a thousand plates. How crystallisation changes with large numbers of samples.

Authors:  Janet Newman
Journal:  Methods       Date:  2011-05-06       Impact factor: 3.608

6.  Heat stability of the lysozyme-substrate complex.

Authors:  K Hayashi; M Kugimiya; M Funatsu
Journal:  J Biochem       Date:  1968-07       Impact factor: 3.387

7.  Spectroscopic studies on the protective effect of a specific sugar on concanavalin A at acidic, neutral and alkaline pH.

Authors:  Rizwan Hasan Khan; Aabgeena Naeem; Masroor Alam Baig
Journal:  Cell Mol Biol Lett       Date:  2005       Impact factor: 5.787

8.  Light-absorbing properties, stability, and spectral stabilization of indocyanine green.

Authors:  M L Landsman; G Kwant; G A Mook; W G Zijlstra
Journal:  J Appl Physiol       Date:  1976-04       Impact factor: 3.531

9.  Growth rates of protein crystals.

Authors:  Jeremy D Schmit; Ken Dill
Journal:  J Am Chem Soc       Date:  2012-02-23       Impact factor: 15.419

10.  Crystallization and evaluation of hen egg-white lysozyme crystals for protein pH titration in the crystalline state.

Authors:  Wakari Iwai; Daichi Yagi; Takuya Ishikawa; Yuki Ohnishi; Ichiro Tanaka; Nobuo Niimura
Journal:  J Synchrotron Radiat       Date:  2008-04-18       Impact factor: 2.616

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  5 in total

1.  Formulation screening by differential scanning fluorimetry: how often does it work?

Authors:  Marko Ristic; Nicholas Rosa; Shane A Seabrook; Janet Newman
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-09-23       Impact factor: 1.056

2.  Searching for conditions of protein self-assembly by protein crystallization screening method.

Authors:  Tuo-Di Zhang; Liang-Liang Chen; Wen-Juan Lin; Wen-Pu Shi; Jia-Qi Wang; Chen-Yan Zhang; Wei-Hong Guo; Xudong Deng; Da-Chuan Yin
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3.  Using isoelectric point to determine the pH for initial protein crystallization trials.

Authors:  Jobie Kirkwood; David Hargreaves; Simon O'Keefe; Julie Wilson
Journal:  Bioinformatics       Date:  2015-01-07       Impact factor: 6.937

Review 4.  Not making the cut: Techniques to prevent RNA cleavage in structural studies of RNase-RNA complexes.

Authors:  Seth P Jones; Christian Goossen; Sean D Lewis; Annie M Delaney; Michael L Gleghorn
Journal:  J Struct Biol X       Date:  2022-03-11

5.  Analysis of crystallization data in the Protein Data Bank.

Authors:  Jobie Kirkwood; David Hargreaves; Simon O'Keefe; Julie Wilson
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-09-23       Impact factor: 1.056

  5 in total

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