Literature DB >> 31770938

Catalystlike role of impurities in speeding layer-by-layer growth.

Tien M Phan1, Stephen Whitelam2, Jeremy D Schmit1.   

Abstract

Molecular self-assembly is usually done at low supersaturation, leading to low rates of growth, in order to allow time for binding mistakes to anneal. However, such conditions can lead to prohibitively long assembly times where growth proceeds by the slow nucleation of successive layers. Here we use a lattice model of molecular self-assembly to show that growth in this regime can be sped up by impurities, which lower the free-energy cost of layer nucleation. Under certain conditions impurities behave almost as a catalyst in that they are present at high concentration at the surface of the assembling structure, but at low concentration in the bulk of the assembled structure. Extrapolation of our numerics using simple analytic arguments suggests that this mechanism can reduce growth times by orders of magnitude in parameter regimes applicable to molecular systems.

Entities:  

Year:  2019        PMID: 31770938      PMCID: PMC8194389          DOI: 10.1103/PhysRevE.100.042114

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  21 in total

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Authors: 
Journal:  Phys Rev Lett       Date:  1989-05-08       Impact factor: 9.161

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Authors:  Seunghwa Ryu; Wei Cai
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-03-25

3.  Computational analysis of binary segregation during colloidal crystallization with DNA-mediated interactions.

Authors:  Raynaldo T Scarlett; John C Crocker; Talid Sinno
Journal:  J Chem Phys       Date:  2010-06-21       Impact factor: 3.488

4.  Dynamic pathways for viral capsid assembly.

Authors:  Michael F Hagan; David Chandler
Journal:  Biophys J       Date:  2006-03-24       Impact factor: 4.033

5.  Probing interfacial equilibration in microsphere crystals formed by DNA-directed assembly.

Authors:  Anthony J Kim; Raynaldo Scarlett; Paul L Biancaniello; Talid Sinno; John C Crocker
Journal:  Nat Mater       Date:  2008-11-30       Impact factor: 43.841

6.  Role of reversibility in viral capsid growth: a paradigm for self-assembly.

Authors:  D C Rapaport
Journal:  Phys Rev Lett       Date:  2008-10-28       Impact factor: 9.161

7.  Simulations of nucleation and early growth stages of protein crystals.

Authors:  A M Kierzek; W M Wolf; P Zielenkiewicz
Journal:  Biophys J       Date:  1997-08       Impact factor: 4.033

8.  Enhancement of protein crystal nucleation by critical density fluctuations.

Authors:  P R ten Wolde; D Frenkel
Journal:  Science       Date:  1997-09-26       Impact factor: 47.728

9.  Self-assembly at a nonequilibrium critical point.

Authors:  Stephen Whitelam; Lester O Hedges; Jeremy D Schmit
Journal:  Phys Rev Lett       Date:  2014-04-17       Impact factor: 9.161

10.  Growth rates of protein crystals.

Authors:  Jeremy D Schmit; Ken Dill
Journal:  J Am Chem Soc       Date:  2012-02-23       Impact factor: 15.419

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  1 in total

1.  Conformational entropy limits the transition from nucleation to elongation in amyloid aggregation.

Authors:  Tien M Phan; Jeremy D Schmit
Journal:  Biophys J       Date:  2022-07-01       Impact factor: 3.699

  1 in total

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