Literature DB >> 20199035

The stabilities of protein crystals.

Jeremy D Schmit1, Ken A Dill.   

Abstract

We describe a model for protein crystallization equilibria. The model includes four terms, (1) protein translational entropy opposes crystallization, (2) proteins are attracted to each other by a nonelectrostatic contact free energy favoring crystallization, (3) proteins in the crystal repel each other but, to a greater extent, attract counterions sequestered in the crystal, which favors crystallization, and (4) the translational entropy of the counterions opposes their sequestration into the crystal, opposing crystallization. We treat the electrostatics using the nonlinear Poisson-Boltzmann equation, and we use unit cell information from native protein crystals to determine the boundary conditions. This model predicts the stabilities of protein crystals as functions of temperature, pH, and salt concentrations, in good agreement with the data of Pusey et al. on tetragonal and orthorhombic crystal forms of lysozyme. The experiments show a weak dependence of crystal solubility on pH. According to the model, this is because the entropic cost to neutralize the crystal is compensated by favorable protein-salt interactions. Experiments also show that adding salt stabilizes the crystal. Cohn's empirical law predicts that the logarithm of solubility should be a linear function of salt. The present theory predicts nonlinearity, in better agreement with the experiments. The model shows that the salting out phenomena is not due to more counterion shielding but to lowered counterion translational entropy. Models of this type may help guide faster and better ways to crystallize proteins.

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Year:  2010        PMID: 20199035      PMCID: PMC2919244          DOI: 10.1021/jp9107188

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  12 in total

1.  Calculation of weak protein-protein interactions: the pH dependence of the second virial coefficient.

Authors:  A H Elcock; J A McCammon
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

2.  Orthorhombic lysozyme solubility.

Authors:  F Ewing; E Forsythe; M Pusey
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-07-01

3.  Phase knowledge enables rational screens for protein crystallization.

Authors:  Megan J Anderson; Carl L Hansen; Stephen R Quake
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-30       Impact factor: 11.205

Review 4.  Protein crystallization: from purified protein to diffraction-quality crystal.

Authors:  Naomi E Chayen; Emmanuel Saridakis
Journal:  Nat Methods       Date:  2008-02       Impact factor: 28.547

5.  A summary of the measured pK values of the ionizable groups in folded proteins.

Authors:  Gerald R Grimsley; J Martin Scholtz; C Nick Pace
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

6.  Protein interactions in solution characterized by light and neutron scattering: comparison of lysozyme and chymotrypsinogen.

Authors:  O D Velev; E W Kaler; A M Lenhoff
Journal:  Biophys J       Date:  1998-12       Impact factor: 4.033

7.  Potential of mean force treatment of salt-mediated protein crystallization.

Authors:  D M Soumpasis; Y Georgalis
Journal:  Biophys J       Date:  1997-06       Impact factor: 4.033

8.  Isoelectric points of proteins: theoretical determination.

Authors:  A Sillero; J M Ribeiro
Journal:  Anal Biochem       Date:  1989-06       Impact factor: 3.365

9.  Phase behavior of aqueous solutions containing dipolar proteins from second-order perturbation theory.

Authors:  F W Tavares; D Bratko; A Striolo; H W Blanch; J M Prausnitz
Journal:  J Chem Phys       Date:  2004-05-22       Impact factor: 3.488

10.  High-resolution structure (1.33 A) of a HEW lysozyme tetragonal crystal grown in the APCF apparatus. Data and structural comparison with a crystal grown under microgravity from SpaceHab-01 mission.

Authors:  M C Vaney; S Maignan; M Riès-Kautt; A Ducriux
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-05-01
View more
  6 in total

1.  Electrostatics and aggregation: how charge can turn a crystal into a gel.

Authors:  Jeremy D Schmit; Stephen Whitelam; Ken Dill
Journal:  J Chem Phys       Date:  2011-08-28       Impact factor: 3.488

2.  Comparative roles of charge, π, and hydrophobic interactions in sequence-dependent phase separation of intrinsically disordered proteins.

Authors:  Suman Das; Yi-Hsuan Lin; Robert M Vernon; Julie D Forman-Kay; Hue Sun Chan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-02       Impact factor: 11.205

3.  Ion Specificity and Nonmonotonic Protein Solubility from Salt Entropy.

Authors:  Yuba Raj Dahal; Jeremy D Schmit
Journal:  Biophys J       Date:  2018-01-09       Impact factor: 4.033

4.  Growth rates of protein crystals.

Authors:  Jeremy D Schmit; Ken Dill
Journal:  J Am Chem Soc       Date:  2012-02-23       Impact factor: 15.419

5.  Packing interface energetics in different crystal forms of the λ Cro dimer.

Authors:  Logan S Ahlstrom; Osamu Miyashita
Journal:  Proteins       Date:  2013-11-23

6.  Stable, metastable, and kinetically trapped amyloid aggregate phases.

Authors:  Tatiana Miti; Mentor Mulaj; Jeremy D Schmit; Martin Muschol
Journal:  Biomacromolecules       Date:  2014-12-18       Impact factor: 6.988

  6 in total

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