Literature DB >> 19177368

A summary of the measured pK values of the ionizable groups in folded proteins.

Gerald R Grimsley1, J Martin Scholtz, C Nick Pace.   

Abstract

We tabulated 541 measured pK values reported in the literature for the Asp, Glu, His, Cys, Tyr, and Lys side chains, and the C and N termini of 78 folded proteins. The majority of these values are for the Asp, Glu, and His side chains. The average pK values are Asp 3.5 +/- 1.2 (139); Glu 4.2 +/- 0.9 (153); His 6.6 +/- 1.0 (131); Cys 6.8 +/- 2.7 (25); Tyr 10.3 +/- 1.2 (20); Lys 10.5 +/- 1.1 (35); C-terminus 3.3 +/- 0.8 (22) and N-terminus 7.7 +/- 0.5 (16). We compare these results with the measured pK values of these groups in alanine pentapeptides, and comment on our overall findings.

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Year:  2009        PMID: 19177368      PMCID: PMC2708032          DOI: 10.1002/pro.19

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  43 in total

1.  The effect of net charge on the solubility, activity, and stability of ribonuclease Sa.

Authors:  K L Shaw; G R Grimsley; G I Yakovlev; A A Makarov; C N Pace
Journal:  Protein Sci       Date:  2001-06       Impact factor: 6.725

2.  pK values of the ionizable groups of proteins.

Authors:  Richard L Thurlkill; Gerald R Grimsley; J Martin Scholtz; C Nick Pace
Journal:  Protein Sci       Date:  2006-04-05       Impact factor: 6.725

3.  High apparent dielectric constant inside a protein reflects structural reorganization coupled to the ionization of an internal Asp.

Authors:  Daniel A Karp; Apostolos G Gittis; Mary R Stahley; Carolyn A Fitch; Wesley E Stites; Bertrand García-Moreno E
Journal:  Biophys J       Date:  2006-12-15       Impact factor: 4.033

4.  Electrostatic contributions to the stability of the GCN4 leucine zipper structure.

Authors:  William M Matousek; Barbara Ciani; Carolyn A Fitch; Bertrand Garcia-Moreno; Richard A Kammerer; Andrei T Alexandrescu
Journal:  J Mol Biol       Date:  2007-09-11       Impact factor: 5.469

5.  Hydrogen bonding markedly reduces the pK of buried carboxyl groups in proteins.

Authors:  Richard L Thurlkill; Gerald R Grimsley; J Martin Scholtz; C Nick Pace
Journal:  J Mol Biol       Date:  2006-07-29       Impact factor: 5.469

6.  Electrostatic interactions in the denatured state and in the transition state for protein folding: effects of denatured state interactions on the analysis of transition state structure.

Authors:  Jae-Hyun Cho; Daniel P Raleigh
Journal:  J Mol Biol       Date:  2006-05-05       Impact factor: 5.469

Review 7.  Factors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations.

Authors:  M R Gunner; Junjun Mao; Yifan Song; Jinrang Kim
Journal:  Biochim Biophys Acta       Date:  2006-06-17

8.  High apparent dielectric constants in the interior of a protein reflect water penetration.

Authors:  J J Dwyer; A G Gittis; D A Karp; E E Lattman; D S Spencer; W E Stites; B García-Moreno E
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

9.  Electrostatic effects in a network of polar and ionizable groups in staphylococcal nuclease.

Authors:  Kelli L Baran; Michael S Chimenti; Jamie L Schlessman; Carolyn A Fitch; Katie J Herbst; Bertrand E Garcia-Moreno
Journal:  J Mol Biol       Date:  2008-04-16       Impact factor: 5.469

10.  On the NMR analysis of pKa values in the unfolded state of proteins by extrapolation to zero denaturant.

Authors:  Jeniffer Quijada; Gary López; Rodney Versace; Luis Ramírez; María Luisa Tasayco
Journal:  Biophys Chem       Date:  2007-06-14       Impact factor: 2.352

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  126 in total

1.  Highly perturbed pKa values in the unfolded state of hen egg white lysozyme.

Authors:  John Bradley; Fergal O'Meara; Damien Farrell; Jens Erik Nielsen
Journal:  Biophys J       Date:  2012-04-03       Impact factor: 4.033

2.  pK(a) values for the unfolded state under native conditions explain the pH-dependent stability of PGB1.

Authors:  Stina Lindman; Mikael C Bauer; Mikael Lund; Carl Diehl; Frans A A Mulder; Mikael Akke; Sara Linse
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

3.  Protective spin-labeled fluorenes maintain amyloid beta peptide in small oligomers and limit transitions in secondary structure.

Authors:  Robin Altman; Sonny Ly; Silvia Hilt; Jitka Petrlova; Izumi Maezawa; Tamás Kálai; Kálmán Hideg; Lee-Way Jin; Ted A Laurence; John C Voss
Journal:  Biochim Biophys Acta       Date:  2015-09-14

Review 4.  The pKa Cooperative: a collaborative effort to advance structure-based calculations of pKa values and electrostatic effects in proteins.

Authors:  Jens E Nielsen; M R Gunner; Bertrand E García-Moreno
Journal:  Proteins       Date:  2011-10-15

5.  NMR determination of pKa values in α-synuclein.

Authors:  Robyn L Croke; Sharadrao M Patil; Jason Quevreaux; Debra A Kendall; Andrei T Alexandrescu
Journal:  Protein Sci       Date:  2010-12-13       Impact factor: 6.725

6.  A pH-dependent switch promotes β-synuclein fibril formation via glutamate residues.

Authors:  Gina M Moriarty; Michael P Olson; Tamr B Atieh; Maria K Janowska; Sagar D Khare; Jean Baum
Journal:  J Biol Chem       Date:  2017-07-14       Impact factor: 5.157

Review 7.  Protein ionizable groups: pK values and their contribution to protein stability and solubility.

Authors:  C Nick Pace; Gerald R Grimsley; J Martin Scholtz
Journal:  J Biol Chem       Date:  2009-01-21       Impact factor: 5.157

8.  Joint neutron crystallographic and NMR solution studies of Tyr residue ionization and hydrogen bonding: Implications for enzyme-mediated proton transfer.

Authors:  Ryszard Michalczyk; Clifford J Unkefer; John-Paul Bacik; Tobias E Schrader; Andreas Ostermann; Andrey Y Kovalevsky; Robert McKenna; Suzanne Zoë Fisher
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-20       Impact factor: 11.205

9.  Sensing pH via p-cyanophenylalanine fluorescence: Application to determine peptide pKa and membrane penetration kinetics.

Authors:  Ileana M Pazos; Ismail A Ahmed; Mariana I León Berríos; Feng Gai
Journal:  Anal Biochem       Date:  2015-04-29       Impact factor: 3.365

10.  Characterization of the complex between native and reduced bovine serum albumin with aquacobalamin and evidence of dual tetrapyrrole binding.

Authors:  Ilia A Dereven'kov; Luciana Hannibal; Sergei V Makarov; Anna S Makarova; Pavel A Molodtsov; Oskar I Koifman
Journal:  J Biol Inorg Chem       Date:  2018-05-02       Impact factor: 3.358

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