Literature DB >> 22139192

In-house SAD phasing with surface-bound cerium ions.

K Natesan Vennila1, Devadasan Velmurugan.   

Abstract

The anomalous signal of cerium(III) ions present in a derivative of hen egg-white lysozyme (HEWL) crystals obtained by the addition of 0.025 M cerium chloride to the crystallization medium was used for phasing. X-ray intensity data were collected to 2 Å resolution using an in-house Cu Kα radiation data-collection facility. Phasing of a single-wavelength data set purely based on its f'' led to a clearly interpretable electron-density map. Automated substructure solution by AutoSol in PHENIX resulted in four highest peaks corresponding to cerium(III) ions with data limited to 3 Å resolution, and about 90% of the residues were built automatically by AutoBuild in PHENIX. Cerium(III) ions bound on the surface of the enzyme are found to interact mainly with the main-chain and side-chain carbonyl groups of Asn, Glu, Tyr and Asp and with water molecules. Ce(3+) ions were used as potential anomalous scatterers for the in-house single-wavelength anomalous scattering technique, and this is proposed as a tool for macromolecular phasing and for the study of the interactions of trivalent metal ions with proteins and other macromolecules.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 22139192      PMCID: PMC3232165          DOI: 10.1107/S1744309111035718

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  22 in total

1.  On the routine use of soft X-rays in macromolecular crystallography.

Authors:  M S Weiss; T Sicker; K Djinovic-Carugo; R Hilgenfeld
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-04-24

2.  Protein crystal structure solution by fast incorporation of negatively and positively charged anomalous scatterers.

Authors:  R A Nagem; Z Dauter; I Polikarpov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-06-21

3.  Jolly SAD.

Authors:  Zbigniew Dauter; Miroslawa Dauter; Eleanor Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-02-21

4.  Can anomalous signal of sulfur become a tool for solving protein crystal structures?

Authors:  Z Dauter; M Dauter; E de La Fortelle; G Bricogne; G M Sheldrick
Journal:  J Mol Biol       Date:  1999-05-28       Impact factor: 5.469

5.  Generating isomorphous heavy-atom derivatives by a quick-soak method. Part I: test cases.

Authors:  Peter D Sun; Sergei Radaev; Michael Kattah
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-06-20

6.  Using surface-bound rubidium ions for protein phasing.

Authors:  S Korolev; I Dementieva; R Sanishvili; W Minor; Z Otwinowski; A Joachimiak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-06-21

7.  Triiodide derivatization and combinatorial counter-ion replacement: two methods for enhancing phasing signal using laboratory Cu Kalpha X-ray equipment.

Authors:  Gwyndaf Evans; Gérard Bricogne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-05-29

8.  Anomalous signal of solvent bromides used for phasing of lysozyme.

Authors:  Z Dauter; M Dauter
Journal:  J Mol Biol       Date:  1999-05-28       Impact factor: 5.469

9.  Novel approach to phasing proteins: derivatization by short cryo-soaking with halides.

Authors:  Z Dauter; M Dauter; K R Rajashankar
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-02

10.  Phasing on anomalous signal of sulfurs: what is the limit?

Authors:  Udupi A Ramagopal; Miroslawa Dauter; Zbigniew Dauter
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-05-23
View more
  4 in total

1.  In-house zinc SAD phasing at Cu Kα edge.

Authors:  Min-Kyu Kim; Sangmin Lee; Young Jun An; Chang-Sook Jeong; Chang-Jun Ji; Jin-Won Lee; Sun-Shin Cha
Journal:  Mol Cells       Date:  2013-05-18       Impact factor: 5.034

2.  Use of europium ions for SAD phasing of lysozyme at the Cu Kα wavelength.

Authors:  Balakrishnan Vijayakumar; Devadasan Velmurugan
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-12-25

3.  Structure determination by multiple-wavelength anomalous dispersion (MAD) at the Pr LIII edge.

Authors:  Sandra Puehringer; Michael Hellmig; Sunbin Liu; Manfred S Weiss; Markus C Wahl; Uwe Mueller
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-07-31

4.  Interaction of two imidazolium gemini surfactants with two model proteins BSA and HEWL.

Authors:  W Gospodarczyk; M Kozak
Journal:  Colloid Polym Sci       Date:  2015-07-08       Impact factor: 1.931

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.