Literature DB >> 23295480

Use of europium ions for SAD phasing of lysozyme at the Cu Kα wavelength.

Balakrishnan Vijayakumar1, Devadasan Velmurugan.   

Abstract

Europium is shown to be a good anomalous scatterer in SAD phasing for solving the structure of biological macromolecules. The large value of the anomalous contribution of europium, f'' = 11.17 e(-), at the Cu Kα wavelength is an advantage in de novo phasing and automated model building. Tetragonal crystals of hen egg-white lysozyme (HEWL) incorporating europium(III) chloride (50 mM) were obtained which diffracted to a resolution of 2.3 Å at a wavelength of 1.54 Å (Cu Kα). The master data set (360° frames) was split and analyzed for anomalous signal-to-noise ratio, multiplicity, completeness, SAD phasing and automated building. The structure solution and model building of the split data sets were carried out using phenix.autosol and phenix.autobuild. The contributions of the Eu ions to SAD phasing using in-house data collection are discussed. This study revealed successful lysozyme phasing by SAD using laboratory-source data involving Eu ions, which are mainly coordinated by the side chains of Asn46, Asp52 and Asp101 together with some water molecules.

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Year:  2012        PMID: 23295480      PMCID: PMC3539697          DOI: 10.1107/S1744309112047562

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  30 in total

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4.  On the routine use of soft X-rays in macromolecular crystallography. Part III. The optimal data-collection wavelength.

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8.  In-house SAD phasing with surface-bound cerium ions.

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9.  X-ray crystallography shows that translational initiation factor IF3 consists of two compact alpha/beta domains linked by an alpha-helix.

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10.  MolProbity: all-atom structure validation for macromolecular crystallography.

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