Literature DB >> 12037300

Triiodide derivatization and combinatorial counter-ion replacement: two methods for enhancing phasing signal using laboratory Cu Kalpha X-ray equipment.

Gwyndaf Evans1, Gérard Bricogne.   

Abstract

A series of experiments performed at Cu Kalpha wavelength on in-house X-ray equipment are presented which investigate two possibilities for enhancing the experimental phasing signal by means of (i) triiodide/iodide soaks using KI/I(2) and (ii) combinations of counter-ions introduced using the short cryosoak method. Triiodide-derivative crystal structures for five test proteins have been refined and reveal that iodine can bind as polyiodide and single iodide ions through hydrophobic and hydrogen-bonding interactions both at the molecular surface and in intramolecular and intermolecular cavities. In three cases, the structures could be automatically determined with autoSHARP using in-house SAD and SIRAS data. The investigation of combinatorial counter-ion replacement using multiple salts with Na(+) and Cs(+) as cations and I(-) and Cl(-) as anions reveals that, for the case of hen egg-white lysozyme, significant improvement in phasing signal is obtained by the combined use of salts compared with SIRAS methods using native and single short-soak derivative data sets.

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Year:  2002        PMID: 12037300     DOI: 10.1107/s0907444902005486

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  15 in total

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3.  In-house SAD phasing with surface-bound cerium ions.

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6.  Streptococcus pneumoniae endohexosaminidase D, structural and mechanistic insight into substrate-assisted catalysis in family 85 glycoside hydrolases.

Authors:  D Wade Abbott; Matthew S Macauley; David J Vocadlo; Alisdair B Boraston
Journal:  J Biol Chem       Date:  2009-01-30       Impact factor: 5.157

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Authors:  Melanie A Higgins; D Wade Abbott; Martin J Boulanger; Alisdair B Boraston
Journal:  J Mol Biol       Date:  2009-03-12       Impact factor: 5.469

8.  Divergent modes of glycan recognition by a new family of carbohydrate-binding modules.

Authors:  Katie J Gregg; Ron Finn; D Wade Abbott; Alisdair B Boraston
Journal:  J Biol Chem       Date:  2008-02-21       Impact factor: 5.157

9.  N-acetylglucosamine recognition by a family 32 carbohydrate-binding module from Clostridium perfringens NagH.

Authors:  Elizabeth Ficko-Blean; Alisdair B Boraston
Journal:  J Mol Biol       Date:  2009-05-05       Impact factor: 5.469

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Authors:  Travis A Pemberton; Brady R Still; Emily M Christensen; Harkewal Singh; Dhiraj Srivastava; John J Tanner
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-07-17
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