Literature DB >> 12777765

Phasing on anomalous signal of sulfurs: what is the limit?

Udupi A Ramagopal1, Miroslawa Dauter, Zbigniew Dauter.   

Abstract

Recent years have witnessed significant advancements in X-ray data-acquisition techniques and phasing algorithms, which have made possible the successful use of a very small anomalous diffraction signal for the solution of crystal structures of macromolecules. Two crystal structures, a 44 kDa glucose isomerase containing nine sulfurs and a 33 kDa xylanase containing five sulfurs, have been solved from single-wavelength anomalous data using widely available methods and programs. These two enzymes contain less sulfur than most proteins in the bacterial or eukaryotic proteomes, providing a Bijvoet ratio of about 0.6%. For glucose isomerase the automatically interpretable electron-density maps could be obtained at high as well as low resolution. The S-SAD approach relies on the anomalous signal of sulfur naturally occurring in proteins and alleviates all need for sample derivatization. It may therefore be applicable to all protein crystals able to provide accurate diffraction data.

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Year:  2003        PMID: 12777765     DOI: 10.1107/s0907444903007467

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  18 in total

1.  Multi-crystal anomalous diffraction for low-resolution macromolecular phasing.

Authors:  Qun Liu; Zhen Zhang; Wayne A Hendrickson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-12-16

2.  Crystallization and preliminary X-ray diffraction analysis of HML, a lectin from the red marine alga Hypnea musciformis.

Authors:  Celso S Nagano; Francisca Gallego del Sol; Benildo S Cavada; Kyria Santiago Do Nascimento; Eudismar Vale Nunes; Alexandre H Sampaio; Juan J Calvete
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-10-20

3.  Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal.

Authors:  Rakhi Agarwal; Jeffrey B Bonanno; Stephen K Burley; Subramanyam Swaminathan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-03-18

4.  Experimental phasing using zinc and sulfur anomalous signals measured at the zinc absorption peak.

Authors:  Sangmin Lee; Min-Kyu Kim; Chang-Jun Ji; Jin-Won Lee; Sun-Shin Cha
Journal:  J Microbiol       Date:  2013-10-31       Impact factor: 3.422

5.  In-house zinc SAD phasing at Cu Kα edge.

Authors:  Min-Kyu Kim; Sangmin Lee; Young Jun An; Chang-Sook Jeong; Chang-Jun Ji; Jin-Won Lee; Sun-Shin Cha
Journal:  Mol Cells       Date:  2013-05-18       Impact factor: 5.034

6.  Use of massively multiple merged data for low-resolution S-SAD phasing and refinement of flavivirus NS1.

Authors:  David L Akey; W Clay Brown; Jamie R Konwerski; Craig M Ogata; Janet L Smith
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-09-27

Review 7.  Many Ways to Derivatize Macromolecules and Their Crystals for Phasing.

Authors:  Miroslawa Dauter; Zbigniew Dauter
Journal:  Methods Mol Biol       Date:  2017

8.  In-house SAD phasing with surface-bound cerium ions.

Authors:  K Natesan Vennila; Devadasan Velmurugan
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-11-25

9.  S-SAD phasing study of death receptor 6 and its solution conformation revealed by SAXS.

Authors:  Heng Ru; Lixia Zhao; Wei Ding; Lianying Jiao; Neil Shaw; Wenguang Liang; Liguo Zhang; Li-Wei Hung; Naohiro Matsugaki; Soichi Wakatsuki; Zhi-Jie Liu
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-04-17

10.  Utility of anion and cation combinations for phasing of protein structures.

Authors:  Ashwani Sharma; Manickam Yogavel; Amit Sharma
Journal:  J Struct Funct Genomics       Date:  2012-05-06
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