Literature DB >> 23686432

In-house zinc SAD phasing at Cu Kα edge.

Min-Kyu Kim1, Sangmin Lee, Young Jun An, Chang-Sook Jeong, Chang-Jun Ji, Jin-Won Lee, Sun-Shin Cha.   

Abstract

De novo zinc single-wavelength anomalous dispersion (Zn-SAD) phasing has been demonstrated with the 1.9 Å resolution data of glucose isomerase and 2.6 Å resolution data of Staphylococcus aureus Fur (SaFur) collected using in-house Cu Kα X-ray source. The successful in-house Zn-SAD phasing of glucose isomerase, based on the anomalous signals of both zinc ions introduced to crystals by soaking and native sulfur atoms, drove us to determine the structure of SaFur, a zinc-containing transcription factor, by Zn-SAD phasing using in-house X-ray source. The abundance of zinc-containing proteins in nature, the easy zinc derivatization of the protein surface, no need of synchrotron access, and the successful experimental phasing with the modest 2.6 Å resolution SAD data indicate that inhouse Zn-SAD phasing can be widely applicable to structure determination.

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Year:  2013        PMID: 23686432      PMCID: PMC3887929          DOI: 10.1007/s10059-013-0074-1

Source DB:  PubMed          Journal:  Mol Cells        ISSN: 1016-8478            Impact factor:   5.034


  60 in total

1.  On the routine use of soft X-rays in macromolecular crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-04-24

2.  HAD, a data bank of heavy-atom binding sites in protein crystals: a resource for use in multiple isomorphous replacement and anomalous scattering.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-11-01

Review 3.  Screening for phasing atoms in protein crystallography.

Authors:  T J Boggon; L Shapiro
Journal:  Structure       Date:  2000-07-15       Impact factor: 5.006

4.  Anomalous signal of phosphorus used for phasing DNA oligomer: importance of data redundancy.

Authors:  Z Dauter; D A Adamiak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-06-21

5.  Jolly SAD.

Authors:  Zbigniew Dauter; Miroslawa Dauter; Eleanor Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-02-21

6.  Applications of anomalous scattering from S atoms for improved phasing of protein diffraction data collected at Cu Kalpha wavelength.

Authors:  C Yang; J W Pflugrath
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-09-21

7.  Can anomalous signal of sulfur become a tool for solving protein crystal structures?

Authors:  Z Dauter; M Dauter; E de La Fortelle; G Bricogne; G M Sheldrick
Journal:  J Mol Biol       Date:  1999-05-28       Impact factor: 5.469

8.  S-SAD, Se-SAD and S/Se-SIRAS using Cu Kalpha radiation: why wait for synchrotron time?

Authors:  Christopher T Lemke; G David Smith; P Lynne Howell
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-11-23

9.  Automated structure solution, density modification and model building.

Authors:  Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

10.  Apocrustacyanin A1 from the lobster carotenoprotein alpha-crustacyanin: crystallization and initial X-ray analysis involving softer X-rays.

Authors:  N E Chayen; M Cianci; A Olczak; J Raftery; P J Rizkallah; P F Zagalsky; J R Helliwell
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-08
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  2 in total

1.  Experimental phasing using zinc and sulfur anomalous signals measured at the zinc absorption peak.

Authors:  Sangmin Lee; Min-Kyu Kim; Chang-Jun Ji; Jin-Won Lee; Sun-Shin Cha
Journal:  J Microbiol       Date:  2013-10-31       Impact factor: 3.422

2.  Cadmium SAD phasing at CuKα wavelength.

Authors:  Igor E Eliseev; Anna N Yudenko; Valeria M Ukrainskaya; Oleg B Chakchir
Journal:  F1000Res       Date:  2019-01-21
  2 in total

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