Literature DB >> 22038764

Genomics really gets personal: how exome and whole genome sequencing challenge the ethical framework of human genetics research.

Holly K Tabor1, Benjamin E Berkman, Sara Chandros Hull, Michael J Bamshad.   

Abstract

Exome sequencing (ES) and whole genome sequencing (WGS) putatively identify all adverse functional alleles of protein-coding genes. Accordingly, while ES/WGS are transformative new tools for gene discovery in human and medical genetics research, they also generate new manifestations of ethical issues related to the consent process, data sharing, and return of results. These manifestations have yet to be comprehensively framed, due in part to the rapidity with which new technologies for ES/WGS are being applied and because of a lack of empirical data to provide guidance. Accordingly, researchers, funding agencies, and policy makers have largely dealt with these issues intuitively. We explain how use of ES/WGS challenges: (i) models under which informed consent is typically obtained; (ii) how harms associated with data sharing are considered; and (iii) the nature of obligations surrounding unanticipated findings. We provide broad guidance about interim ways to contend with these issues and make broad recommendations for areas for novel resource and policy development.
Copyright © 2011 Wiley Periodicals, Inc.

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Year:  2011        PMID: 22038764      PMCID: PMC4819320          DOI: 10.1002/ajmg.a.34357

Source DB:  PubMed          Journal:  Am J Med Genet A        ISSN: 1552-4825            Impact factor:   2.802


  37 in total

1.  The NCBI dbGaP database of genotypes and phenotypes.

Authors:  Matthew D Mailman; Michael Feolo; Yumi Jin; Masato Kimura; Kimberly Tryka; Rinat Bagoutdinov; Luning Hao; Anne Kiang; Justin Paschall; Lon Phan; Natalia Popova; Stephanie Pretel; Lora Ziyabari; Moira Lee; Yu Shao; Zhen Y Wang; Karl Sirotkin; Minghong Ward; Michael Kholodov; Kerry Zbicz; Jeffrey Beck; Michael Kimelman; Sergey Shevelev; Don Preuss; Eugene Yaschenko; Alan Graeff; James Ostell; Stephen T Sherry
Journal:  Nat Genet       Date:  2007-10       Impact factor: 38.330

2.  Multimarker analysis and imputation of multiple platform pooling-based genome-wide association studies.

Authors:  Nils Homer; Waibhav D Tembe; Szabolcs Szelinger; Margot Redman; Dietrich A Stephan; John V Pearson; Stanley F Nelson; David Craig
Journal:  Bioinformatics       Date:  2008-07-10       Impact factor: 6.937

3.  Offering individual genetic research results: context matters.

Authors:  Laura M Beskow; Wylie Burke
Journal:  Sci Transl Med       Date:  2010-06-30       Impact factor: 17.956

4.  Reporting genetic results in research studies: summary and recommendations of an NHLBI working group.

Authors:  Ebony B Bookman; Aleisha A Langehorne; John H Eckfeldt; Kathleen C Glass; Gail P Jarvik; Michael Klag; Greg Koski; Arno Motulsky; Benjamin Wilfond; Teri A Manolio; Richard R Fabsitz; Russell V Luepker
Journal:  Am J Med Genet A       Date:  2006-05-15       Impact factor: 2.802

5.  Research ethics. Research practice and participant preferences: the growing gulf.

Authors:  S B Trinidad; S M Fullerton; E J Ludman; G P Jarvik; E B Larson; W Burke
Journal:  Science       Date:  2011-01-21       Impact factor: 47.728

Review 6.  Managing incidental findings in human subjects research: analysis and recommendations.

Authors:  Susan M Wolf; Frances P Lawrenz; Charles A Nelson; Jeffrey P Kahn; Mildred K Cho; Ellen Wright Clayton; Joel G Fletcher; Michael K Georgieff; Dale Hammerschmidt; Kathy Hudson; Judy Illes; Vivek Kapur; Moira A Keane; Barbara A Koenig; Bonnie S Leroy; Elizabeth G McFarland; Jordan Paradise; Lisa S Parker; Sharon F Terry; Brian Van Ness; Benjamin S Wilfond
Journal:  J Law Med Ethics       Date:  2008       Impact factor: 1.718

7.  Understanding incidental findings in the context of genetics and genomics.

Authors:  Mildred K Cho
Journal:  J Law Med Ethics       Date:  2008       Impact factor: 1.718

8.  Complete Khoisan and Bantu genomes from southern Africa.

Authors:  Stephan C Schuster; Webb Miller; Aakrosh Ratan; Lynn P Tomsho; Belinda Giardine; Lindsay R Kasson; Robert S Harris; Desiree C Petersen; Fangqing Zhao; Ji Qi; Can Alkan; Jeffrey M Kidd; Yazhou Sun; Daniela I Drautz; Pascal Bouffard; Donna M Muzny; Jeffrey G Reid; Lynne V Nazareth; Qingyu Wang; Richard Burhans; Cathy Riemer; Nicola E Wittekindt; Priya Moorjani; Elizabeth A Tindall; Charles G Danko; Wee Siang Teo; Anne M Buboltz; Zhenhai Zhang; Qianyi Ma; Arno Oosthuysen; Abraham W Steenkamp; Hermann Oostuisen; Philippus Venter; John Gajewski; Yu Zhang; B Franklin Pugh; Kateryna D Makova; Anton Nekrutenko; Elaine R Mardis; Nick Patterson; Tom H Pringle; Francesca Chiaromonte; James C Mullikin; Evan E Eichler; Ross C Hardison; Richard A Gibbs; Timothy T Harkins; Vanessa M Hayes
Journal:  Nature       Date:  2010-02-18       Impact factor: 49.962

9.  Identification by whole-genome resequencing of gene defect responsible for severe hypercholesterolemia.

Authors:  Jonathan Rios; Evan Stein; Jay Shendure; Helen H Hobbs; Jonathan C Cohen
Journal:  Hum Mol Genet       Date:  2010-08-18       Impact factor: 6.150

10.  The diploid genome sequence of an individual human.

Authors:  Samuel Levy; Granger Sutton; Pauline C Ng; Lars Feuk; Aaron L Halpern; Brian P Walenz; Nelson Axelrod; Jiaqi Huang; Ewen F Kirkness; Gennady Denisov; Yuan Lin; Jeffrey R MacDonald; Andy Wing Chun Pang; Mary Shago; Timothy B Stockwell; Alexia Tsiamouri; Vineet Bafna; Vikas Bansal; Saul A Kravitz; Dana A Busam; Karen Y Beeson; Tina C McIntosh; Karin A Remington; Josep F Abril; John Gill; Jon Borman; Yu-Hui Rogers; Marvin E Frazier; Stephen W Scherer; Robert L Strausberg; J Craig Venter
Journal:  PLoS Biol       Date:  2007-09-04       Impact factor: 8.029

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  65 in total

Review 1.  The tension between data sharing and the protection of privacy in genomics research.

Authors:  Jane Kaye
Journal:  Annu Rev Genomics Hum Genet       Date:  2012-03-09       Impact factor: 8.929

Review 2.  Applications of high-throughput DNA sequencing to benign hematology.

Authors:  Vijay G Sankaran; Patrick G Gallagher
Journal:  Blood       Date:  2013-09-10       Impact factor: 22.113

3.  Informed consent for whole genome sequencing: a qualitative analysis of participant expectations and perceptions of risks, benefits, and harms.

Authors:  Holly K Tabor; Jacquie Stock; Tracy Brazg; Margaret J McMillin; Karin M Dent; Joon-Ho Yu; Jay Shendure; Michael J Bamshad
Journal:  Am J Med Genet A       Date:  2012-04-24       Impact factor: 2.802

4.  Whole Genome Sequencing as a Genetic Test for Autism Spectrum Disorder: From Bench to Bedside and then Back Again.

Authors:  Michael J Szego; Ma'n H Zawati
Journal:  J Can Acad Child Adolesc Psychiatry       Date:  2016-05-01

5.  Challenges for providing genetic counselling in Colombian genetic clinics: the viewpoint of the physicians providing genetic consultations.

Authors:  Clemencia Rodas-Pérez; Angus Clarke; John Powell; Margaret Thorogood
Journal:  J Community Genet       Date:  2015-06-19

6.  Ethical Implications of Clinical Genomic Information, Records Research, and Informed Consent.

Authors:  Susannah W Lee
Journal:  Ochsner J       Date:  2018

Review 7.  Disclosure of incidental findings from next-generation sequencing in pediatric genomic research.

Authors:  Ruqayyah Abdul-Karim; Benjamin E Berkman; David Wendler; Annette Rid; Javed Khan; Tom Badgett; Sara Chandros Hull
Journal:  Pediatrics       Date:  2013-02-11       Impact factor: 7.124

8.  Research participants' attitudes towards the confidentiality of genomic sequence information.

Authors:  Leila Jamal; Julie C Sapp; Katie Lewis; Tatiane Yanes; Flavia M Facio; Leslie G Biesecker; Barbara B Biesecker
Journal:  Eur J Hum Genet       Date:  2013-11-27       Impact factor: 4.246

Review 9.  Evolving approaches to the ethical management of genomic data.

Authors:  Jean E McEwen; Joy T Boyer; Kathie Y Sun
Journal:  Trends Genet       Date:  2013-02-28       Impact factor: 11.639

10.  Practices and policies of clinical exome sequencing providers: analysis and implications.

Authors:  Seema M Jamal; Joon-Ho Yu; Jessica X Chong; Karin M Dent; Jessie H Conta; Holly K Tabor; Michael J Bamshad
Journal:  Am J Med Genet A       Date:  2013-05       Impact factor: 2.802

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