Literature DB >> 24021670

Applications of high-throughput DNA sequencing to benign hematology.

Vijay G Sankaran1, Patrick G Gallagher.   

Abstract

The development of novel technologies for high-throughput DNA sequencing is having a major impact on our ability to measure and define normal and pathologic variation in humans. This review discusses advances in DNA sequencing that have been applied to benign hematologic disorders, including those affecting the red blood cell, the neutrophil, and other white blood cell lineages. Relevant examples of how these approaches have been used for disease diagnosis, gene discovery, and studying complex traits are provided. High-throughput DNA sequencing technology holds significant promise for impacting clinical care. This includes development of improved disease detection and diagnosis, better understanding of disease progression and stratification of risk of disease-specific complications, and development of improved therapeutic strategies, particularly patient-specific pharmacogenomics-based therapy, with monitoring of therapy by genomic biomarkers.

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Year:  2013        PMID: 24021670      PMCID: PMC3837507          DOI: 10.1182/blood-2013-07-460337

Source DB:  PubMed          Journal:  Blood        ISSN: 0006-4971            Impact factor:   22.113


  86 in total

Review 1.  Genomic medicine: a decade of successes, challenges, and opportunities.

Authors:  Jeanette J McCarthy; Howard L McLeod; Geoffrey S Ginsburg
Journal:  Sci Transl Med       Date:  2013-06-12       Impact factor: 17.956

Review 2.  Disorders of red cell volume regulation.

Authors:  Patrick G Gallagher
Journal:  Curr Opin Hematol       Date:  2013-05       Impact factor: 3.284

3.  Germline mutations of regulator of telomere elongation helicase 1, RTEL1, in Dyskeratosis congenita.

Authors:  Bari J Ballew; Meredith Yeager; Kevin Jacobs; Neelam Giri; Joseph Boland; Laurie Burdett; Blanche P Alter; Sharon A Savage
Journal:  Hum Genet       Date:  2013-01-18       Impact factor: 4.132

4.  Multiple clinical forms of dehydrated hereditary stomatocytosis arise from mutations in PIEZO1.

Authors:  Immacolata Andolfo; Seth L Alper; Lucia De Franceschi; Carla Auriemma; Roberta Russo; Luigia De Falco; Fara Vallefuoco; Maria Rosaria Esposito; David H Vandorpe; Boris E Shmukler; Rupa Narayan; Donatella Montanaro; Maria D'Armiento; Annalisa Vetro; Ivan Limongelli; Orsetta Zuffardi; Bertil E Glader; Stanley L Schrier; Carlo Brugnara; Gordon W Stewart; Jean Delaunay; Achille Iolascon
Journal:  Blood       Date:  2013-03-11       Impact factor: 22.113

Review 5.  Disease-targeted sequencing: a cornerstone in the clinic.

Authors:  Heidi L Rehm
Journal:  Nat Rev Genet       Date:  2013-03-12       Impact factor: 53.242

6.  Point-counterpoint. Ethics and genomic incidental findings.

Authors:  Amy L McGuire; Steven Joffe; Barbara A Koenig; Barbara B Biesecker; Laurence B McCullough; Jennifer S Blumenthal-Barby; Timothy Caulfield; Sharon F Terry; Robert C Green
Journal:  Science       Date:  2013-05-16       Impact factor: 47.728

7.  Point-counterpoint. Patient autonomy and incidental findings in clinical genomics.

Authors:  Susan M Wolf; George J Annas; Sherman Elias
Journal:  Science       Date:  2013-05-16       Impact factor: 47.728

8.  GATA2 haploinsufficiency caused by mutations in a conserved intronic element leads to MonoMAC syndrome.

Authors:  Amy P Hsu; Kirby D Johnson; E Liana Falcone; Rajendran Sanalkumar; Lauren Sanchez; Dennis D Hickstein; Jennifer Cuellar-Rodriguez; Jacob E Lemieux; Christa S Zerbe; Emery H Bresnick; Steven M Holland
Journal:  Blood       Date:  2013-03-15       Impact factor: 22.113

9.  A congenital neutrophil defect syndrome associated with mutations in VPS45.

Authors:  Thierry Vilboux; Atar Lev; May Christine V Malicdan; Amos J Simon; Päivi Järvinen; Tomas Racek; Jacek Puchalka; Raman Sood; Blake Carrington; Kevin Bishop; James Mullikin; Marjan Huizing; Ben Zion Garty; Eran Eyal; Baruch Wolach; Ronit Gavrieli; Amos Toren; Michalle Soudack; Osama M Atawneh; Tatiana Babushkin; Ginette Schiby; Andrew Cullinane; Camila Avivi; Sylvie Polak-Charcon; Iris Barshack; Ninette Amariglio; Gideon Rechavi; Jutte van der Werff ten Bosch; Yair Anikster; Christoph Klein; William A Gahl; Raz Somech
Journal:  N Engl J Med       Date:  2013-06-05       Impact factor: 91.245

10.  Dehydrated hereditary stomatocytosis linked to gain-of-function mutations in mechanically activated PIEZO1 ion channels.

Authors:  Juliette Albuisson; Swetha E Murthy; Michael Bandell; Bertrand Coste; Hélène Louis-Dit-Picard; Jayanti Mathur; Madeleine Fénéant-Thibault; Gérard Tertian; Jean-Pierre de Jaureguiberry; Pierre-Yves Syfuss; Stuart Cahalan; Loic Garçon; Fabienne Toutain; Pierre Simon Rohrlich; Jean Delaunay; Véronique Picard; Xavier Jeunemaitre; Ardem Patapoutian
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

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  14 in total

1.  From helix to hematology: introduction to a collection of reviews on the emerging role of next-generation sequencing in hematology.

Authors:  David M Bodine
Journal:  Blood       Date:  2013-09-09       Impact factor: 22.113

Review 2.  Erythro-megakaryocytic transcription factors associated with hereditary anemia.

Authors:  John D Crispino; Mitchell J Weiss
Journal:  Blood       Date:  2014-03-20       Impact factor: 22.113

3.  Global transcriptome analyses of human and murine terminal erythroid differentiation.

Authors:  Xiuli An; Vincent P Schulz; Jie Li; Kunlu Wu; Jing Liu; Fumin Xue; Jingping Hu; Narla Mohandas; Patrick G Gallagher
Journal:  Blood       Date:  2014-03-17       Impact factor: 22.113

4.  Insight into GATA1 transcriptional activity through interrogation of cis elements disrupted in human erythroid disorders.

Authors:  Aoi Wakabayashi; Jacob C Ulirsch; Leif S Ludwig; Claudia Fiorini; Makiko Yasuda; Avik Choudhuri; Patrick McDonel; Leonard I Zon; Vijay G Sankaran
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-04       Impact factor: 11.205

5.  Whole-Exome Sequencing Identifies Loci Associated with Blood Cell Traits and Reveals a Role for Alternative GFI1B Splice Variants in Human Hematopoiesis.

Authors:  Linda M Polfus; Rajiv K Khajuria; Ursula M Schick; Nathan Pankratz; Raha Pazoki; Jennifer A Brody; Ming-Huei Chen; Paul L Auer; James S Floyd; Jie Huang; Leslie Lange; Frank J A van Rooij; Richard A Gibbs; Ginger Metcalf; Donna Muzny; Narayanan Veeraraghavan; Klaudia Walter; Lu Chen; Lisa Yanek; Lewis C Becker; Gina M Peloso; Aoi Wakabayashi; Mart Kals; Andres Metspalu; Tõnu Esko; Keolu Fox; Robert Wallace; Nora Franceschini; Nena Matijevic; Kenneth M Rice; Traci M Bartz; Leo-Pekka Lyytikäinen; Mika Kähönen; Terho Lehtimäki; Olli T Raitakari; Ruifang Li-Gao; Dennis O Mook-Kanamori; Guillaume Lettre; Cornelia M van Duijn; Oscar H Franco; Stephen S Rich; Fernando Rivadeneira; Albert Hofman; André G Uitterlinden; James G Wilson; Bruce M Psaty; Nicole Soranzo; Abbas Dehghan; Eric Boerwinkle; Xiaoling Zhang; Andrew D Johnson; Christopher J O'Donnell; Jill M Johnsen; Alexander P Reiner; Santhi K Ganesh; Vijay G Sankaran
Journal:  Am J Hum Genet       Date:  2016-08-04       Impact factor: 11.025

6.  Global transcriptome analysis and enhancer landscape of human primary T follicular helper and T effector lymphocytes.

Authors:  Jason S Weinstein; Kimberly Lezon-Geyda; Yelena Maksimova; Samuel Craft; Yaoping Zhang; Mack Su; Vincent P Schulz; Joseph Craft; Patrick G Gallagher
Journal:  Blood       Date:  2014-10-20       Impact factor: 22.113

7.  X-linked macrocytic dyserythropoietic anemia in females with an ALAS2 mutation.

Authors:  Vijay G Sankaran; Jacob C Ulirsch; Vassili Tchaikovskii; Leif S Ludwig; Aoi Wakabayashi; Senkottuvelan Kadirvel; R Coleman Lindsley; Rafael Bejar; Jiahai Shi; Scott B Lovitch; David F Bishop; David P Steensma
Journal:  J Clin Invest       Date:  2015-02-23       Impact factor: 14.808

Review 8.  Human and murine erythropoiesis.

Authors:  Xiuli An; Vincent P Schulz; Narla Mohandas; Patrick G Gallagher
Journal:  Curr Opin Hematol       Date:  2015-05       Impact factor: 3.284

Review 9.  Society for Pediatric Research 2015 Young Investigator Award: genetics of human hematopoiesis-what patients can teach us about blood cell production.

Authors:  Aoi Wakabayashi; Vijay G Sankaran
Journal:  Pediatr Res       Date:  2015-11-17       Impact factor: 3.756

10.  Altered chromatin occupancy of master regulators underlies evolutionary divergence in the transcriptional landscape of erythroid differentiation.

Authors:  Jacob C Ulirsch; Jessica N Lacy; Xiuli An; Narla Mohandas; Tarjei S Mikkelsen; Vijay G Sankaran
Journal:  PLoS Genet       Date:  2014-12-18       Impact factor: 5.917

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