Literature DB >> 17898773

The NCBI dbGaP database of genotypes and phenotypes.

Matthew D Mailman1, Michael Feolo, Yumi Jin, Masato Kimura, Kimberly Tryka, Rinat Bagoutdinov, Luning Hao, Anne Kiang, Justin Paschall, Lon Phan, Natalia Popova, Stephanie Pretel, Lora Ziyabari, Moira Lee, Yu Shao, Zhen Y Wang, Karl Sirotkin, Minghong Ward, Michael Kholodov, Kerry Zbicz, Jeffrey Beck, Michael Kimelman, Sergey Shevelev, Don Preuss, Eugene Yaschenko, Alan Graeff, James Ostell, Stephen T Sherry.   

Abstract

The National Center for Biotechnology Information has created the dbGaP public repository for individual-level phenotype, exposure, genotype and sequence data and the associations between them. dbGaP assigns stable, unique identifiers to studies and subsets of information from those studies, including documents, individual phenotypic variables, tables of trait data, sets of genotype data, computed phenotype-genotype associations, and groups of study subjects who have given similar consents for use of their data.

Mesh：

Year:  2007        PMID： 17898773      PMCID： PMC2031016          DOI： 10.1038/ng1007-1181

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


  4 in total

1.  Genomic control for association studies.

Authors:  B Devlin; K Roeder
Journal:  Biometrics       Date:  1999-12       Impact factor: 2.571

2.  Population structure, differential bias and genomic control in a large-scale, case-control association study.

Authors:  David G Clayton; Neil M Walker; Deborah J Smyth; Rebecca Pask; Jason D Cooper; Lisa M Maier; Luc J Smink; Alex C Lam; Nigel R Ovington; Helen E Stevens; Sarah Nutland; Joanna M M Howson; Malek Faham; Martin Moorhead; Hywel B Jones; Matthew Falkowski; Paul Hardenbol; Thomas D Willis; John A Todd
Journal:  Nat Genet       Date:  2005-10-09       Impact factor: 38.330

3.  Ethics. Identifiability in genomic research.

Authors:  William W Lowrance; Francis S Collins
Journal:  Science       Date:  2007-08-03       Impact factor: 47.728

4.  New models of collaboration in genome-wide association studies: the Genetic Association Information Network.

Authors:  Teri A Manolio; Laura Lyman Rodriguez; Lisa Brooks; Gonçalo Abecasis; Dennis Ballinger; Mark Daly; Peter Donnelly; Stephen V Faraone; Kelly Frazer; Stacey Gabriel; Pablo Gejman; Alan Guttmacher; Emily L Harris; Thomas Insel; John R Kelsoe; Eric Lander; Norma McCowin; Matthew D Mailman; Elizabeth Nabel; James Ostell; Elizabeth Pugh; Stephen Sherry; Patrick F Sullivan; John F Thompson; James Warram; David Wholley; Patrice M Milos; Francis S Collins
Journal:  Nat Genet       Date:  2007-09       Impact factor: 38.330
  4 in total
  574 in total

1.  Ethical and practical challenges of sharing data from genome-wide association studies: the eMERGE Consortium experience.

Authors:  Amy L McGuire; Melissa Basford; Lynn G Dressler; Stephanie M Fullerton; Barbara A Koenig; Rongling Li; Cathy A McCarty; Erin Ramos; Maureen E Smith; Carol P Somkin; Carol Waudby; Wendy A Wolf; Ellen Wright Clayton
Journal:  Genome Res       Date:  2011-06-01       Impact factor: 9.043

2.  Variants at the endocannabinoid receptor CB1 gene (CNR1) and insulin sensitivity, type 2 diabetes, and coronary heart disease.

Authors:  Jose M de Miguel-Yanes; Alisa K Manning; Peter Shrader; Jarred B McAteer; Anuj Goel; Anders Hamsten; Caroline S Fox; Jose C Florez; Josée Dupuis; James B Meigs
Journal:  Obesity (Silver Spring)       Date:  2011-06-02       Impact factor: 5.002

3.  Associations between incident ischemic stroke events and stroke and cardiovascular disease-related genome-wide association studies single nucleotide polymorphisms in the Population Architecture Using Genomics and Epidemiology study.

Authors:  Cara L Carty; Petra Buzková; Myriam Fornage; Nora Franceschini; Shelley Cole; Gerardo Heiss; Lucia A Hindorff; Barbara V Howard; Sue Mann; Lisa W Martin; Ying Zhang; Tara C Matise; Ross Prentice; Alexander P Reiner; Charles Kooperberg
Journal:  Circ Cardiovasc Genet       Date:  2012-03-08

Review 4.  Bioinformatics for personal genome interpretation.

Authors:  Emidio Capriotti; Nathan L Nehrt; Maricel G Kann; Yana Bromberg
Journal:  Brief Bioinform       Date:  2012-01-13       Impact factor: 11.622

5.  Donation intentions for cancer genetics research among African Americans.

Authors:  Jasmine A McDonald; Benita Weathers; Frances K Barg; Andrea B Troxel; Judy A Shea; Deborah Bowen; Carmen E Guerra; Chanita Hughes Halbert
Journal:  Genet Test Mol Biomarkers       Date:  2012-01-06

6.  A flexible likelihood framework for detecting associations with secondary phenotypes in genetic studies using selected samples: application to sequence data.

Authors:  Dajiang J Liu; Suzanne M Leal
Journal:  Eur J Hum Genet       Date:  2011-12-14       Impact factor: 4.246

7.  Using PhenX measures to identify opportunities for cross-study analysis.

Authors:  Huaqin Pan; Kimberly A Tryka; Daniel J Vreeman; Wayne Huggins; Michael J Phillips; Jayashri P Mehta; Jacqueline H Phillips; Clement J McDonald; Heather A Junkins; Erin M Ramos; Carol M Hamilton
Journal:  Hum Mutat       Date:  2012-04-03       Impact factor: 4.878

8.  Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.

Authors:  S J Winham; A B Cuellar-Barboza; A Oliveros; S L McElroy; S Crow; C Colby; D-S Choi; M Chauhan; M Frye; J M Biernacka
Journal:  Mol Psychiatry       Date:  2013-12-10       Impact factor: 15.992

9.  Heterogeneity in effects of genetically determined adiposity on insulin resistance and type 2 diabetes: The atherosclerosis risk in communities study.

Authors:  Tingting Liu; Changwei Li; Luqi Shen; Ye Shen; Weibo Mao; Shengxu Li
Journal:  J Diabetes Complications       Date:  2018-01-03       Impact factor: 2.852

10.  Understanding the role of conscientiousness in healthy aging: where does the brain come in?

Authors:  Christopher J Patrick
Journal:  Dev Psychol       Date:  2014-05
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