Literature DB >> 21933715

Initial evaluation of a direct detection device detector for single particle cryo-electron microscopy.

Anna-Clare Milazzo1, Anchi Cheng, Arne Moeller, Dmitry Lyumkis, Erica Jacovetty, James Polukas, Mark H Ellisman, Nguyen-Huu Xuong, Bridget Carragher, Clinton S Potter.   

Abstract

We report on initial results of using a new direct detection device (DDD) for single particle reconstruction of vitreous ice embedded specimens. Images were acquired on a Tecnai F20 at 200keV and a nominal magnification of 29,000×. This camera has a significantly improved signal to noise ratio and modulation transfer function (MTF) at 200keV compared to a standard CCD camera installed on the same microscope. Control of the DDD has been integrated into Leginon, an automated data collection system. Using GroEL as a test specimen, we obtained images of ∼30K particles with the CCD and the DDD from the same specimen sample using essentially identical imaging conditions. Comparison of the maps reconstructed from the CCD images and the DDD images demonstrates the improved performance of the DDD. We also obtained a 3D reconstruction from ∼70K GroEL particles acquired using the DDD; the quality of the density map demonstrates the potential of this new recording device for cryoEM data acquisition. Copyright Â
© 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21933715      PMCID: PMC3210420          DOI: 10.1016/j.jsb.2011.09.002

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  33 in total

1.  Characterisation of the signal and noise transfer of CCD cameras for electron detection.

Authors:  R R Meyer; A I Kirkland
Journal:  Microsc Res Tech       Date:  2000-05-01       Impact factor: 2.769

2.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

3.  FindEM--a fast, efficient program for automatic selection of particles from electron micrographs.

Authors:  A M Roseman
Journal:  J Struct Biol       Date:  2004 Jan-Feb       Impact factor: 2.867

4.  The 13 angstroms structure of a chaperonin GroEL-protein substrate complex by cryo-electron microscopy.

Authors:  Scott Falke; Florence Tama; Charles L Brooks; Edward P Gogol; Mark T Fisher
Journal:  J Mol Biol       Date:  2005-04-22       Impact factor: 5.469

5.  Does contamination buildup limit throughput for automated cryoEM?

Authors:  Anchi Cheng; Denis Fellmann; James Pulokas; Clinton S Potter; Bridget Carragher
Journal:  J Struct Biol       Date:  2006-04-05       Impact factor: 2.867

6.  Single particle analysis based on Zernike phase contrast transmission electron microscopy.

Authors:  Radostin Danev; Kuniaki Nagayama
Journal:  J Struct Biol       Date:  2007-11-06       Impact factor: 2.867

7.  Direct electron imaging in electron microscopy with monolithic active pixel sensors.

Authors:  G Deptuch; A Besson; P Rehak; M Szelezniak; J Wall; M Winter; Y Zhu
Journal:  Ultramicroscopy       Date:  2007-01-28       Impact factor: 2.689

8.  Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction.

Authors:  Xing Zhang; Ethan Settembre; Chen Xu; Philip R Dormitzer; Richard Bellamy; Stephen C Harrison; Nikolaus Grigorieff
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-31       Impact factor: 11.205

9.  Principles and prospects of direct high resolution electron image acquisition with CMOS detectors at low energies.

Authors:  A R Faruqi
Journal:  J Phys Condens Matter       Date:  2009-07-07       Impact factor: 2.333

10.  Atomic structure of human adenovirus by cryo-EM reveals interactions among protein networks.

Authors:  Hongrong Liu; Lei Jin; Sok Boon S Koh; Ivo Atanasov; Stan Schein; Lily Wu; Z Hong Zhou
Journal:  Science       Date:  2010-08-27       Impact factor: 47.728

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  40 in total

1.  Single-particle electron microscopy in the study of membrane protein structure.

Authors:  Rita De Zorzi; Wei Mi; Maofu Liao; Thomas Walz
Journal:  Microscopy (Oxf)       Date:  2015-10-15       Impact factor: 1.571

2.  Removing Contamination-Induced Reconstruction Artifacts from Cryo-electron Tomograms.

Authors:  Jose-Jesus Fernandez; Ulrike Laugks; Miroslava Schaffer; Felix J B Bäuerlein; Maryam Khoshouei; Wolfgang Baumeister; Vladan Lucic
Journal:  Biophys J       Date:  2015-12-30       Impact factor: 4.033

3.  Evaluation of super-resolution performance of the K2 electron-counting camera using 2D crystals of aquaporin-0.

Authors:  Po-Lin Chiu; Xueming Li; Zongli Li; Brian Beckett; Axel F Brilot; Nikolaus Grigorieff; David A Agard; Yifan Cheng; Thomas Walz
Journal:  J Struct Biol       Date:  2015-08-28       Impact factor: 2.867

4.  Direct electron detection yields cryo-EM reconstructions at resolutions beyond 3/4 Nyquist frequency.

Authors:  Benjamin E Bammes; Ryan H Rochat; Joanita Jakana; Dong-Hua Chen; Wah Chiu
Journal:  J Struct Biol       Date:  2012-01-21       Impact factor: 2.867

Review 5.  Invited review article: Methods for imaging weak-phase objects in electron microscopy.

Authors:  Robert M Glaeser
Journal:  Rev Sci Instrum       Date:  2013-11       Impact factor: 1.523

6.  CTER-rapid estimation of CTF parameters with error assessment.

Authors:  Pawel A Penczek; Jia Fang; Xueming Li; Yifan Cheng; Justus Loerke; Christian M T Spahn
Journal:  Ultramicroscopy       Date:  2014-02-07       Impact factor: 2.689

7.  Getting Started with In Situ Cryo-Electron Tomography.

Authors:  Daniel Serwas; Karen M Davies
Journal:  Methods Mol Biol       Date:  2021

8.  Editorial overview: Cryo Electron Microscopy: Exciting advances in CryoEM Herald a new era in structural biology.

Authors:  Wah Chiu; Kenneth H Downing
Journal:  Curr Opin Struct Biol       Date:  2017-08-08       Impact factor: 6.809

Review 9.  Cryo-EM in drug discovery: achievements, limitations and prospects.

Authors:  Jean-Paul Renaud; Ashwin Chari; Claudio Ciferri; Wen-Ti Liu; Hervé-William Rémigy; Holger Stark; Christian Wiesmann
Journal:  Nat Rev Drug Discov       Date:  2018-06-08       Impact factor: 84.694

10.  Creating an infrastructure for high-throughput high-resolution cryogenic electron microscopy.

Authors:  Donald C Shrum; Brent W Woodruff; Scott M Stagg
Journal:  J Struct Biol       Date:  2012-07-25       Impact factor: 2.867

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