Literature DB >> 22285189

Direct electron detection yields cryo-EM reconstructions at resolutions beyond 3/4 Nyquist frequency.

Benjamin E Bammes1, Ryan H Rochat, Joanita Jakana, Dong-Hua Chen, Wah Chiu.   

Abstract

One limitation in electron cryo-microscopy (cryo-EM) is the inability to recover high-resolution signal from the image-recording media at the full-resolution limit of the transmission electron microscope. Direct electron detection using CMOS-based sensors for digitally recording images has the potential to alleviate this shortcoming. Here, we report a practical performance evaluation of a Direct Detection Device (DDD®) for biological cryo-EM at two different microscope voltages: 200 and 300 kV. Our DDD images of amorphous and graphitized carbon show strong per-pixel contrast with image resolution near the theoretical sampling limit of the data. Single-particle reconstructions of two frozen-hydrated bacteriophages, P22 and ε15, establish that the DDD is capable of recording usable signal for 3D reconstructions at about 4/5 of the Nyquist frequency, which is a vast improvement over the performance of conventional imaging media. We anticipate the unparalleled performance of this digital recording device will dramatically benefit cryo-EM for routine tomographic and single-particle structural determination of biological specimens. Copyright Â
© 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22285189      PMCID: PMC3314222          DOI: 10.1016/j.jsb.2012.01.008

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  43 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

Review 2.  CCD detectors in high-resolution biological electron microscopy.

Authors:  A R Faruqi; S Subramaniam
Journal:  Q Rev Biophys       Date:  2000-02       Impact factor: 5.318

3.  Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy.

Authors:  Peter B Rosenthal; Richard Henderson
Journal:  J Mol Biol       Date:  2003-10-31       Impact factor: 5.469

4.  2dx--user-friendly image processing for 2D crystals.

Authors:  Bryant Gipson; Xiangyan Zeng; Zi Yan Zhang; Henning Stahlberg
Journal:  J Struct Biol       Date:  2006-09-01       Impact factor: 2.867

5.  Direct electron imaging in electron microscopy with monolithic active pixel sensors.

Authors:  G Deptuch; A Besson; P Rehak; M Szelezniak; J Wall; M Winter; Y Zhu
Journal:  Ultramicroscopy       Date:  2007-01-28       Impact factor: 2.689

6.  Achievable resolution from images of biological specimens acquired from a 4k x 4k CCD camera in a 300-kV electron cryomicroscope.

Authors:  Dong-Hua Chen; Joanita Jakana; Xiangan Liu; Michael F Schmid; Wah Chiu
Journal:  J Struct Biol       Date:  2008-04-14       Impact factor: 2.867

7.  Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy.

Authors:  J F Conway; N Cheng; A Zlotnick; P T Wingfield; S J Stahl; A C Steven
Journal:  Nature       Date:  1997-03-06       Impact factor: 49.962

8.  Applications of a slow-scan CCD camera in protein electron crystallography.

Authors:  J Brink; W Chiu
Journal:  J Struct Biol       Date:  1994 Jul-Aug       Impact factor: 2.867

9.  JADAS: a customizable automated data acquisition system and its application to ice-embedded single particles.

Authors:  Junjie Zhang; Natsuko Nakamura; Yuko Shimizu; Nathan Liang; Xiangan Liu; Joanita Jakana; Michael P Marsh; Christopher R Booth; Takao Shinkawa; Munetaka Nakata; Wah Chiu
Journal:  J Struct Biol       Date:  2008-09-30       Impact factor: 2.867

10.  Estimating contrast transfer function and associated parameters by constrained non-linear optimization.

Authors:  C Yang; W Jiang; D-H Chen; U Adiga; E G Ng; W Chiu
Journal:  J Microsc       Date:  2009-03       Impact factor: 1.758

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  48 in total

Review 1.  Single particle electron cryo-microscopy of a mammalian ion channel.

Authors:  Maofu Liao; Erhu Cao; David Julius; Yifan Cheng
Journal:  Curr Opin Struct Biol       Date:  2014-03-25       Impact factor: 6.809

Review 2.  Toward a high-resolution structure of IP₃R channel.

Authors:  Irina I Serysheva
Journal:  Cell Calcium       Date:  2014-08-10       Impact factor: 6.817

3.  Evaluation of super-resolution performance of the K2 electron-counting camera using 2D crystals of aquaporin-0.

Authors:  Po-Lin Chiu; Xueming Li; Zongli Li; Brian Beckett; Axel F Brilot; Nikolaus Grigorieff; David A Agard; Yifan Cheng; Thomas Walz
Journal:  J Struct Biol       Date:  2015-08-28       Impact factor: 2.867

4.  Noise models and cryo-EM drift correction with a direct-electron camera.

Authors:  H Shigematsu; F J Sigworth
Journal:  Ultramicroscopy       Date:  2013-04-18       Impact factor: 2.689

5.  Magic angle spinning NMR reveals sequence-dependent structural plasticity, dynamics, and the spacer peptide 1 conformation in HIV-1 capsid protein assemblies.

Authors:  Yun Han; Guangjin Hou; Christopher L Suiter; Jinwoo Ahn; In-Ja L Byeon; Andrew S Lipton; Sarah Burton; Ivan Hung; Peter L Gor'kov; Zhehong Gan; William Brey; David Rice; Angela M Gronenborn; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2013-11-13       Impact factor: 15.419

6.  CTER-rapid estimation of CTF parameters with error assessment.

Authors:  Pawel A Penczek; Jia Fang; Xueming Li; Yifan Cheng; Justus Loerke; Christian M T Spahn
Journal:  Ultramicroscopy       Date:  2014-02-07       Impact factor: 2.689

7.  Refined Cryo-EM Structure of the T4 Tail Tube: Exploring the Lowest Dose Limit.

Authors:  Weili Zheng; Fengbin Wang; Nicholas M I Taylor; Ricardo C Guerrero-Ferreira; Petr G Leiman; Edward H Egelman
Journal:  Structure       Date:  2017-07-27       Impact factor: 5.006

8.  Subunit conformational variation within individual GroEL oligomers resolved by Cryo-EM.

Authors:  Soung-Hun Roh; Corey F Hryc; Hyun-Hwan Jeong; Xue Fei; Joanita Jakana; George H Lorimer; Wah Chiu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-14       Impact factor: 11.205

Review 9.  Three-dimensional reconstruction of helical polymers.

Authors:  Edward H Egelman
Journal:  Arch Biochem Biophys       Date:  2015-04-22       Impact factor: 4.013

10.  Creating an infrastructure for high-throughput high-resolution cryogenic electron microscopy.

Authors:  Donald C Shrum; Brent W Woodruff; Scott M Stagg
Journal:  J Struct Biol       Date:  2012-07-25       Impact factor: 2.867

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