Literature DB >> 21885772

Synthetic biology: integrated gene circuits.

Nagarajan Nandagopal1, Michael B Elowitz.   

Abstract

A major goal of synthetic biology is to develop a deeper understanding of biological design principles from the bottom up, by building circuits and studying their behavior in cells. Investigators initially sought to design circuits "from scratch" that functioned as independently as possible from the underlying cellular system. More recently, researchers have begun to develop a new generation of synthetic circuits that integrate more closely with endogenous cellular processes. These approaches are providing fundamental insights into the regulatory architecture, dynamics, and evolution of genetic circuits and enabling new levels of control across diverse biological systems.

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Year:  2011        PMID: 21885772      PMCID: PMC4117316          DOI: 10.1126/science.1207084

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  41 in total

Review 1.  Using synthetic biology to understand the evolution of gene expression.

Authors:  Travis S Bayer
Journal:  Curr Biol       Date:  2010-09-14       Impact factor: 10.834

Review 2.  The second wave of synthetic biology: from modules to systems.

Authors:  Priscilla E M Purnick; Ron Weiss
Journal:  Nat Rev Mol Cell Biol       Date:  2009-06       Impact factor: 94.444

3.  Architecture-dependent noise discriminates functionally analogous differentiation circuits.

Authors:  Tolga Cağatay; Marc Turcotte; Michael B Elowitz; Jordi Garcia-Ojalvo; Gürol M Süel
Journal:  Cell       Date:  2009-10-22       Impact factor: 41.582

4.  A synthetic-natural hybrid oscillator in human cells.

Authors:  Jared E Toettcher; Caroline Mock; Eric Batchelor; Alexander Loewer; Galit Lahav
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-13       Impact factor: 11.205

Review 5.  Functional roles for noise in genetic circuits.

Authors:  Avigdor Eldar; Michael B Elowitz
Journal:  Nature       Date:  2010-09-09       Impact factor: 49.962

Review 6.  The pedestrian watchmaker: genetic clocks from engineered oscillators.

Authors:  Natalie A Cookson; Lev S Tsimring; Jeff Hasty
Journal:  FEBS Lett       Date:  2009-12-17       Impact factor: 4.124

Review 7.  Designing customized cell signalling circuits.

Authors:  Wendell A Lim
Journal:  Nat Rev Mol Cell Biol       Date:  2010-05-19       Impact factor: 94.444

8.  Rapid diversification of cell signaling phenotypes by modular domain recombination.

Authors:  Sergio G Peisajovich; Joan E Garbarino; Ping Wei; Wendell A Lim
Journal:  Science       Date:  2010-04-16       Impact factor: 47.728

9.  Cis-interactions between Notch and Delta generate mutually exclusive signalling states.

Authors:  David Sprinzak; Amit Lakhanpal; Lauren Lebon; Leah A Santat; Michelle E Fontes; Graham A Anderson; Jordi Garcia-Ojalvo; Michael B Elowitz
Journal:  Nature       Date:  2010-04-25       Impact factor: 49.962

10.  Next-generation synthetic gene networks.

Authors:  Timothy K Lu; Ahmad S Khalil; James J Collins
Journal:  Nat Biotechnol       Date:  2009-12       Impact factor: 54.908

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  75 in total

Review 1.  Foundations for the design and implementation of synthetic genetic circuits.

Authors:  Adrian L Slusarczyk; Allen Lin; Ron Weiss
Journal:  Nat Rev Genet       Date:  2012-05-18       Impact factor: 53.242

2.  Scaling down DNA circuits with competitive neural networks.

Authors:  Anthony J Genot; Teruo Fujii; Yannick Rondelez
Journal:  J R Soc Interface       Date:  2013-06-12       Impact factor: 4.118

Review 3.  Emerging tools for synthetic genome design.

Authors:  Bo-Rahm Lee; Suhyung Cho; Yoseb Song; Sun Chang Kim; Byung-Kwan Cho
Journal:  Mol Cells       Date:  2013-05-02       Impact factor: 5.034

4.  The new biology: a bridge to clinical cardiology.

Authors:  Ge Louridas; Kg Lourida
Journal:  Hippokratia       Date:  2012-04       Impact factor: 0.471

5.  Design of fast proteolysis-based signaling and logic circuits in mammalian cells.

Authors:  Tina Fink; Jan Lonzarić; Arne Praznik; Tjaša Plaper; Estera Merljak; Katja Leben; Nina Jerala; Tina Lebar; Žiga Strmšek; Fabio Lapenta; Mojca Benčina; Roman Jerala
Journal:  Nat Chem Biol       Date:  2018-12-10       Impact factor: 15.040

Review 6.  Fate-Regulating Circuits in Viruses: From Discovery to New Therapy Targets.

Authors:  Anand Pai; Leor S Weinberger
Journal:  Annu Rev Virol       Date:  2017-08-11       Impact factor: 10.431

7.  Inducible suppression of global translation by overuse of rare codons.

Authors:  Hideki Kobayashi
Journal:  Appl Environ Microbiol       Date:  2015-01-30       Impact factor: 4.792

8.  Bottom-up construction of in vitro switchable memories.

Authors:  Adrien Padirac; Teruo Fujii; Yannick Rondelez
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-29       Impact factor: 11.205

Review 9.  Synthetic nanoelectronic probes for biological cells and tissues.

Authors:  Bozhi Tian; Charles M Lieber
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2013-02-28       Impact factor: 10.745

Review 10.  Understanding and Engineering Distributed Biochemical Pathways in Microbial Communities.

Authors:  Xinyun Cao; Joshua J Hamilton; Ophelia S Venturelli
Journal:  Biochemistry       Date:  2018-11-20       Impact factor: 3.162

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