Literature DB >> 19461664

The second wave of synthetic biology: from modules to systems.

Priscilla E M Purnick1, Ron Weiss.   

Abstract

Synthetic biology is a research field that combines the investigative nature of biology with the constructive nature of engineering. Efforts in synthetic biology have largely focused on the creation and perfection of genetic devices and small modules that are constructed from these devices. But to view cells as true 'programmable' entities, it is now essential to develop effective strategies for assembling devices and modules into intricate, customizable larger scale systems. The ability to create such systems will result in innovative approaches to a wide range of applications, such as bioremediation, sustainable energy production and biomedical therapies.

Mesh:

Year:  2009        PMID: 19461664     DOI: 10.1038/nrm2698

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  106 in total

1.  Design of genetic networks with specified functions by evolution in silico.

Authors:  Paul François; Vincent Hakim
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-02       Impact factor: 11.205

2.  Oscillations in transcription factor dynamics: a new way to control gene expression.

Authors:  D E Nelson; V Sée; G Nelson; M R H White
Journal:  Biochem Soc Trans       Date:  2004-12       Impact factor: 5.407

3.  Multipass membrane protein structure prediction using Rosetta.

Authors:  Vladimir Yarov-Yarovoy; Jack Schonbrun; David Baker
Journal:  Proteins       Date:  2006-03-01

4.  Synthetic ecosystems based on airborne inter- and intrakingdom communication.

Authors:  Wilfried Weber; Marie Daoud-El Baba; Martin Fussenegger
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-05       Impact factor: 11.205

5.  Building a Parallel Metabolism within the Cell.

Authors:  Aleksandra Filipovska; Oliver Rackham
Journal:  ACS Chem Biol       Date:  2008-01-04       Impact factor: 5.100

6.  An engineered epigenetic transgene switch in mammalian cells.

Authors:  Beat P Kramer; Alessandro Usseglio Viretta; Marie Daoud-El-Baba; Dominique Aubel; Wilfried Weber; Martin Fussenegger
Journal:  Nat Biotechnol       Date:  2004-06-06       Impact factor: 54.908

7.  Codeine-binding RNA aptamers and rapid determination of their binding constants using a direct coupling surface plasmon resonance assay.

Authors:  Maung Nyan Win; Joshua S Klein; Christina D Smolke
Journal:  Nucleic Acids Res       Date:  2006-10-11       Impact factor: 16.971

8.  Improved fusion protein expression of EGFP via the mutation of both Kozak and the initial ATG codon.

Authors:  Chao Dai; Zhijian Cao; Yingliang Wu; Hong Yi; Dahe Jiang; Wenxin Li
Journal:  Cell Mol Biol Lett       Date:  2007-02-17       Impact factor: 5.787

9.  A synthetic Escherichia coli predator-prey ecosystem.

Authors:  Frederick K Balagaddé; Hao Song; Jun Ozaki; Cynthia H Collins; Matthew Barnet; Frances H Arnold; Stephen R Quake; Lingchong You
Journal:  Mol Syst Biol       Date:  2008-04-15       Impact factor: 11.429

10.  A fast, robust and tunable synthetic gene oscillator.

Authors:  Jesse Stricker; Scott Cookson; Matthew R Bennett; William H Mather; Lev S Tsimring; Jeff Hasty
Journal:  Nature       Date:  2008-10-29       Impact factor: 49.962

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  313 in total

1.  Employing the metabolic "branch point effect" to generate an all-or-none, digital-like response in enzymatic outputs and enzyme-based sensors.

Authors:  Sandra Perez Rafael; Alexis Vallée-Bélisle; Esteve Fabregas; Kevin Plaxco; Giuseppe Palleschi; Francesco Ricci
Journal:  Anal Chem       Date:  2011-12-28       Impact factor: 6.986

2.  Shaping up nucleic acid computation.

Authors:  Xi Chen; Andrew D Ellington
Journal:  Curr Opin Biotechnol       Date:  2010-06-09       Impact factor: 9.740

3.  Rationally designed families of orthogonal RNA regulators of translation.

Authors:  Vivek K Mutalik; Lei Qi; Joao C Guimaraes; Julius B Lucks; Adam P Arkin
Journal:  Nat Chem Biol       Date:  2012-03-25       Impact factor: 15.040

4.  Distributed biological computation with multicellular engineered networks.

Authors:  Sergi Regot; Javier Macia; Núria Conde; Kentaro Furukawa; Jimmy Kjellén; Tom Peeters; Stefan Hohmann; Eulàlia de Nadal; Francesc Posas; Ricard Solé
Journal:  Nature       Date:  2010-12-08       Impact factor: 49.962

Review 5.  Exploiting plug-and-play synthetic biology for drug discovery and production in microorganisms.

Authors:  Marnix H Medema; Rainer Breitling; Roel Bovenberg; Eriko Takano
Journal:  Nat Rev Microbiol       Date:  2010-12-29       Impact factor: 60.633

Review 6.  Recent advances and versatility of MAGE towards industrial applications.

Authors:  Vijai Singh; Darren Braddick
Journal:  Syst Synth Biol       Date:  2015-11-07

Review 7.  Integrative systems and synthetic biology of cell-matrix adhesion sites.

Authors:  Eli Zamir
Journal:  Cell Adh Migr       Date:  2016-02-06       Impact factor: 3.405

8.  Structure-Guided Biochemical Analysis of Quorum Signal Synthase Specificities.

Authors:  Shi-Hui Dong; Mila Nhu-Lam; Rajesh Nagarajan; Satish K Nair
Journal:  ACS Chem Biol       Date:  2020-05-13       Impact factor: 5.100

9.  Utilization of a calmodulin lysine methyltransferase co-expression system for the generation of a combinatorial library of post-translationally modified proteins.

Authors:  Roberta Magnani; Brian Chaffin; Emerson Dick; Michael L Bricken; Robert L Houtz; Luke H Bradley
Journal:  Protein Expr Purif       Date:  2012-10-02       Impact factor: 1.650

10.  Robust, tunable genetic memory from protein sequestration combined with positive feedback.

Authors:  Tatenda Shopera; William R Henson; Andrew Ng; Young Je Lee; Kenneth Ng; Tae Seok Moon
Journal:  Nucleic Acids Res       Date:  2015-09-17       Impact factor: 16.971

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