Literature DB >> 23708771

Emerging tools for synthetic genome design.

Bo-Rahm Lee1, Suhyung Cho, Yoseb Song, Sun Chang Kim, Byung-Kwan Cho.   

Abstract

Synthetic biology is an emerging discipline for designing and synthesizing predictable, measurable, controllable, and transformable biological systems. These newly designed biological systems have great potential for the development of cheaper drugs, green fuels, biodegradable plastics, and targeted cancer therapies over the coming years. Fortunately, our ability to quickly and accurately engineer biological systems that behave predictably has been dramatically expanded by significant advances in DNA-sequencing, DNA-synthesis, and DNA-editing technologies. Here, we review emerging technologies and methodologies in the field of building designed biological systems, and we discuss their future perspectives.

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Year:  2013        PMID： 23708771      PMCID： PMC3887862          DOI： 10.1007/s10059-013-0127-5

Source DB:  PubMed          Journal:  Mol Cells        ISSN： 1016-8478            Impact factor:   5.034


  179 in total

1.  RNA expression analysis using a 30 base pair resolution Escherichia coli genome array.

Authors:  D W Selinger; K J Cheung; R Mei; E M Johansson; C S Richmond; F R Blattner; D J Lockhart; G M Church
Journal:  Nat Biotechnol       Date:  2000-12       Impact factor: 54.908

2.  Identification of genes that are associated with DNA repeats in prokaryotes.

Authors:  Ruud Jansen; Jan D A van Embden; Wim Gaastra; Leo M Schouls
Journal:  Mol Microbiol       Date:  2002-03       Impact factor: 3.501

3.  Chromosomal deletion formation system based on Tn5 double transposition: use for making minimal genomes and essential gene analysis.

Authors:  Igor Y Goryshin; Todd A Naumann; Jennifer Apodaca; William S Reznikoff
Journal:  Genome Res       Date:  2003-03-12       Impact factor: 9.043

4.  Targeted genome editing across species using ZFNs and TALENs.

Authors:  Andrew J Wood; Te-Wen Lo; Bryan Zeitler; Catherine S Pickle; Edward J Ralston; Andrew H Lee; Rainier Amora; Jeffrey C Miller; Elo Leung; Xiangdong Meng; Lei Zhang; Edward J Rebar; Philip D Gregory; Fyodor D Urnov; Barbara J Meyer
Journal:  Science       Date:  2011-06-23       Impact factor: 47.728

5.  Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution.

Authors:  Ho Sung Rhee; B Franklin Pugh
Journal:  Cell       Date:  2011-12-09       Impact factor: 41.582

6.  Analysis of CRISPR in Streptococcus mutans suggests frequent occurrence of acquired immunity against infection by M102-like bacteriophages.

Authors:  Jan R van der Ploeg
Journal:  Microbiology       Date:  2009-04-21       Impact factor: 2.777

7.  Phage response to CRISPR-encoded resistance in Streptococcus thermophilus.

Authors:  Hélène Deveau; Rodolphe Barrangou; Josiane E Garneau; Jessica Labonté; Christophe Fremaux; Patrick Boyaval; Dennis A Romero; Philippe Horvath; Sylvain Moineau
Journal:  J Bacteriol       Date:  2007-12-07       Impact factor: 3.490

8.  Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes.

Authors:  Ting Li; Sheng Huang; Xuefeng Zhao; David A Wright; Susan Carpenter; Martin H Spalding; Donald P Weeks; Bing Yang
Journal:  Nucleic Acids Res       Date:  2011-03-31       Impact factor: 16.971

9.  High-frequency modification of plant genes using engineered zinc-finger nucleases.

Authors:  Jeffrey A Townsend; David A Wright; Ronnie J Winfrey; Fengli Fu; Morgan L Maeder; J Keith Joung; Daniel F Voytas
Journal:  Nature       Date:  2009-04-29       Impact factor: 49.962

10.  Complex tumor genomes inferred from single circulating tumor cells by array-CGH and next-generation sequencing.

Authors:  Ellen Heitzer; Martina Auer; Christin Gasch; Martin Pichler; Peter Ulz; Eva Maria Hoffmann; Sigurd Lax; Julie Waldispuehl-Geigl; Oliver Mauermann; Carolin Lackner; Gerald Höfler; Florian Eisner; Heinz Sill; Hellmut Samonigg; Klaus Pantel; Sabine Riethdorf; Thomas Bauernhofer; Jochen B Geigl; Michael R Speicher
Journal:  Cancer Res       Date:  2013-03-07       Impact factor: 12.701
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  6 in total

Review 1.  Systems strategies for developing industrial microbial strains.

Authors:  Sang Yup Lee; Hyun Uk Kim
Journal:  Nat Biotechnol       Date:  2015-10       Impact factor: 54.908

Review 2.  Strategies for cloning and manipulating natural and synthetic chromosomes.

Authors:  Bogumil J Karas; Yo Suzuki; Philip D Weyman
Journal:  Chromosome Res       Date:  2015-02       Impact factor: 5.239

3.  Assembly of long DNA sequences using a new synthetic Escherichia coli-yeast shuttle vector.

Authors:  Zheng Hou; Zheng Zhou; Zonglin Wang; Gengfu Xiao
Journal:  Virol Sin       Date:  2016-04-11       Impact factor: 4.327

4.  Metabolic engineering of rational screened Saccharopolyspora spinosa for the enhancement of spinosyns A and D production.

Authors:  Amit Kumar Jha; Anaya Raj Pokhrel; Amit Kumar Chaudhary; Seong-Whan Park; Wan Je Cho; Jae Kyung Sohng
Journal:  Mol Cells       Date:  2014-09-26       Impact factor: 5.034

5.  Optimization and Characterization of the Synthetic Secondary Chromosome synVicII in Escherichia coli.

Authors:  Sonja J Messerschmidt; Daniel Schindler; Celine M Zumkeller; Franziska S Kemter; Nadine Schallopp; Torsten Waldminghaus
Journal:  Front Bioeng Biotechnol       Date:  2016-12-23

Review 6.  Synthetic Biology Approaches in The Development of Engineered Therapeutic Microbes.

Authors:  Minjeong Kang; Donghui Choe; Kangsan Kim; Byung-Kwan Cho; Suhyung Cho
Journal:  Int J Mol Sci       Date:  2020-11-19       Impact factor: 5.923
  6 in total

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