Literature DB >> 28800289

Fate-Regulating Circuits in Viruses: From Discovery to New Therapy Targets.

Anand Pai1, Leor S Weinberger1,2.   

Abstract

Current antivirals effectively target diverse viruses at various stages of their life cycles. Nevertheless, curative therapy has remained elusive for important pathogens, such as human immunodeficiency virus type 1 (HIV-1) and herpesviruses, in large part due to viral latency and the evolution of resistance to existing therapies. Here, we review the discovery of viral master circuits: virus-encoded autoregulatory gene networks that autonomously control viral expression programs (i.e., between active, latent, and abortive fates). These circuits offer the opportunity for a new class of antivirals that could lead to intrinsic combination-antiviral therapies within a single molecule-evolutionary escape from such circuit-disrupting antivirals would require simultaneous evolution of both the viral cis regulatory element (e.g., the DNA-binding site) and the trans element (e.g., the transcription factor) in order for the virus to recapitulate a circuit that would not be disrupted. We review the architectures of these fate-regulating master circuits in HIV-1 and the human herpesvirus cytomegalovirus along with potential circuit-disruption strategies that may ultimately enable escape-resistant antiviral therapies.

Entities:  

Keywords:  CMV; HIV; autoregulatory circuits; fate regulation; feedback; latency; stochastic noise; transcription; transcriptional fluctuations

Mesh:

Substances:

Year:  2017        PMID: 28800289      PMCID: PMC5940329          DOI: 10.1146/annurev-virology-110615-035606

Source DB:  PubMed          Journal:  Annu Rev Virol        ISSN: 2327-056X            Impact factor:   10.431


  108 in total

1.  Two strategies for gene regulation by promoter nucleosomes.

Authors:  Itay Tirosh; Naama Barkai
Journal:  Genome Res       Date:  2008-04-30       Impact factor: 9.043

2.  Human cytomegalovirus mutant with sequence-dependent resistance to the phosphorothioate oligonucleotide fomivirsen (ISIS 2922).

Authors:  G B Mulamba; A Hu; R F Azad; K P Anderson; D M Coen
Journal:  Antimicrob Agents Chemother       Date:  1998-04       Impact factor: 5.191

Review 3.  Epigenetic regulation of HIV latency.

Authors:  Shweta Hakre; Leonard Chavez; Kotaro Shirakawa; Eric Verdin
Journal:  Curr Opin HIV AIDS       Date:  2011-01       Impact factor: 4.283

4.  Nucleosomal promoter variation generates gene expression noise.

Authors:  Christopher R Brown; Hinrich Boeger
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-02       Impact factor: 11.205

5.  An analog of the natural steroidal alkaloid cortistatin A potently suppresses Tat-dependent HIV transcription.

Authors:  Guillaume Mousseau; Mark A Clementz; Wendy N Bakeman; Nisha Nagarsheth; Michael Cameron; Jun Shi; Phil Baran; Rémi Fromentin; Nicolas Chomont; Susana T Valente
Journal:  Cell Host Microbe       Date:  2012-07-19       Impact factor: 21.023

Review 6.  Engineered gene circuits.

Authors:  Jeff Hasty; David McMillen; J J Collins
Journal:  Nature       Date:  2002-11-14       Impact factor: 49.962

Review 7.  Nature, nurture, or chance: stochastic gene expression and its consequences.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

8.  Stochastic fate selection in HIV-infected patients.

Authors:  Ariel D Weinberger; Leor S Weinberger
Journal:  Cell       Date:  2013-10-24       Impact factor: 41.582

9.  Robust network topologies for generating switch-like cellular responses.

Authors:  Najaf A Shah; Casim A Sarkar
Journal:  PLoS Comput Biol       Date:  2011-06-23       Impact factor: 4.475

10.  Direct cell reprogramming is a stochastic process amenable to acceleration.

Authors:  Jacob Hanna; Krishanu Saha; Bernardo Pando; Jeroen van Zon; Christopher J Lengner; Menno P Creyghton; Alexander van Oudenaarden; Rudolf Jaenisch
Journal:  Nature       Date:  2009-11-08       Impact factor: 49.962

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  11 in total

1.  Post-Transcriptional Noise Control.

Authors:  Maike M K Hansen; Leor S Weinberger
Journal:  Bioessays       Date:  2019-06-21       Impact factor: 4.345

2.  Feedback-mediated signal conversion promotes viral fitness.

Authors:  Noam Vardi; Sonali Chaturvedi; Leor S Weinberger
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-27       Impact factor: 11.205

3.  A molecular mechanism for probabilistic bet hedging and its role in viral latency.

Authors:  Sonali Chaturvedi; Jonathan Klein; Noam Vardi; Cynthia Bolovan-Fritts; Marie Wolf; Kelvin Du; Luwanika Mlera; Meredith Calvert; Nathaniel J Moorman; Felicia Goodrum; Bo Huang; Leor S Weinberger
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-06       Impact factor: 11.205

4.  Pressurized DNA state inside herpes capsids-A novel antiviral target.

Authors:  Alberto Brandariz-Nuñez; Scott J Robinson; Alex Evilevitch
Journal:  PLoS Pathog       Date:  2020-07-23       Impact factor: 6.823

5.  The mobility of packaged phage genome controls ejection dynamics.

Authors:  Alex Evilevitch
Journal:  Elife       Date:  2018-09-04       Impact factor: 8.140

6.  Pressure-driven release of viral genome into a host nucleus is a mechanism leading to herpes infection.

Authors:  Alberto Brandariz-Nuñez; Ting Liu; Te Du; Alex Evilevitch
Journal:  Elife       Date:  2019-08-08       Impact factor: 8.140

Review 7.  Microglial Cells: The Main HIV-1 Reservoir in the Brain.

Authors:  Clementine Wallet; Marco De Rovere; Jeanne Van Assche; Fadoua Daouad; Stéphane De Wit; Virginie Gautier; Patrick W G Mallon; Alessandro Marcello; Carine Van Lint; Olivier Rohr; Christian Schwartz
Journal:  Front Cell Infect Microbiol       Date:  2019-10-24       Impact factor: 5.293

8.  An emerging and variant viral promoter of HIV-1 subtype C exhibits low-level gene expression noise.

Authors:  Haider Ali; Disha Bhange; Kavita Mehta; Yuvrajsinh Gohil; Harshit Kumar Prajapati; Siddappa N Byrareddy; Shilpa Buch; Udaykumar Ranga
Journal:  Retrovirology       Date:  2021-09-19       Impact factor: 4.602

9.  A Post-Transcriptional Feedback Mechanism for Noise Suppression and Fate Stabilization.

Authors:  Maike M K Hansen; Winnie Y Wen; Elena Ingerman; Brandon S Razooky; Cassandra E Thompson; Roy D Dar; Charles W Chin; Michael L Simpson; Leor S Weinberger
Journal:  Cell       Date:  2018-05-10       Impact factor: 41.582

10.  UL25 Capsid Binding Facilitates Mechanical Maturation of the Herpesvirus Capsid and Allows Retention of Pressurized DNA.

Authors:  Krista G Freeman; Jamie B Huffman; Fred L Homa; Alex Evilevitch
Journal:  J Virol       Date:  2021-08-04       Impact factor: 5.103

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