Literature DB >> 25636849

Inducible suppression of global translation by overuse of rare codons.

Hideki Kobayashi1.   

Abstract

Recently, artificial gene networks have been developed in synthetic biology to control gene expression and make organisms as controllable as robots. Here, I present an artificial posttranslational gene-silencing system based on the codon usage bias and low tRNA content corresponding to minor codons. I engineered the green fluorescent protein (GFP) gene to inhibit translation indirectly with the lowest-usage codons to monopolize various minor tRNAs (lgfp). The expression of lgfp interfered nonspecifically with the growth of Escherichia coli, Saccharomyces cerevisiae, human HeLa cervical cancer cells, MCF7 breast cancer cells, and HEK293 kidney cells, as well as phage and adenovirus expansion. Furthermore, insertion of lgfp downstream of a phage response promoter conferred phage resistance on E. coli. Such engineered gene silencers could act as components of biological networks capable of functioning with suitable promoters in E. coli, S. cerevisiae, and human cells to control gene expression. The results presented here show general suppressor artificial genes for live cells and viruses. This robust system provides a gene expression or cell growth control device for artificially synthesized gene networks.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID: 25636849      PMCID: PMC4357939          DOI: 10.1128/AEM.03708-14

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  43 in total

1.  Codon usage tabulated from international DNA sequence databases: status for the year 2000.

Authors:  Y Nakamura; T Gojobori; T Ikemura
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Construction of a genetic toggle switch in Escherichia coli.

Authors:  T S Gardner; C R Cantor; J J Collins
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

3.  A synthetic oscillatory network of transcriptional regulators.

Authors:  M B Elowitz; S Leibler
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

4.  In vivo selection of CD4(+) T cells transduced with a gamma-retroviral vector expressing a single-chain intrabody targeting HIV-1 tat.

Authors:  Stephen E Braun; Ran Taube; Quan Zhu; Fay Eng Wong; Akikazu Murakami; Erick Kamau; Markryan Dwyer; Gang Qiu; Janet Daigle; Angela Carville; R Paul Johnson; Wayne A Marasco
Journal:  Hum Gene Ther       Date:  2012-09       Impact factor: 5.695

Review 5.  Synthetic biology: integrated gene circuits.

Authors:  Nagarajan Nandagopal; Michael B Elowitz
Journal:  Science       Date:  2011-09-02       Impact factor: 47.728

Review 6.  Engineered gene circuits.

Authors:  Jeff Hasty; David McMillen; J J Collins
Journal:  Nature       Date:  2002-11-14       Impact factor: 49.962

7.  Exploring the sequence space for tetracycline-dependent transcriptional activators: novel mutations yield expanded range and sensitivity.

Authors:  S Urlinger; U Baron; M Thellmann; M T Hasan; H Bujard; W Hillen
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-05       Impact factor: 11.205

8.  Using targeted chromatin regulators to engineer combinatorial and spatial transcriptional regulation.

Authors:  Albert J Keung; Caleb J Bashor; Szilvia Kiriakov; James J Collins; Ahmad S Khalil
Journal:  Cell       Date:  2014-07-03       Impact factor: 41.582

Review 9.  Effects of genetic variation on the E. coli host-circuit interface.

Authors:  Stefano Cardinale; Marcin Pawel Joachimiak; Adam Paul Arkin
Journal:  Cell Rep       Date:  2013-07-18       Impact factor: 9.423

10.  Tunable protein degradation in bacteria.

Authors:  D Ewen Cameron; James J Collins
Journal:  Nat Biotechnol       Date:  2014-11-17       Impact factor: 54.908

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  2 in total

1.  Hili Inhibits HIV Replication in Activated T Cells.

Authors:  B Matija Peterlin; Pingyang Liu; Xiaoyun Wang; Daniele Cary; Wei Shao; Marie Leoz; Tian Hong; Tao Pan; Koh Fujinaga
Journal:  J Virol       Date:  2017-05-12       Impact factor: 5.103

2.  Evolutionary insights into T-type Ca2+ channel structure, function, and ion selectivity from the Trichoplax adhaerens homologue.

Authors:  Carolyn L Smith; Salsabil Abdallah; Yuen Yan Wong; Phuong Le; Alicia N Harracksingh; Liana Artinian; Arianna N Tamvacakis; Vincent Rehder; Thomas S Reese; Adriano Senatore
Journal:  J Gen Physiol       Date:  2017-03-22       Impact factor: 4.086

  2 in total

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