Literature DB >> 20829787

Functional roles for noise in genetic circuits.

Avigdor Eldar1, Michael B Elowitz.   

Abstract

The genetic circuits that regulate cellular functions are subject to stochastic fluctuations, or 'noise', in the levels of their components. Noise, far from just a nuisance, has begun to be appreciated for its essential role in key cellular activities. Noise functions in both microbial and eukaryotic cells, in multicellular development, and in evolution. It enables coordination of gene expression across large regulons, as well as probabilistic differentiation strategies that function across cell populations. At the longest timescales, noise may facilitate evolutionary transitions. Here we review examples and emerging principles that connect noise, the architecture of the gene circuits in which it is present, and the biological functions it enables. We further indicate some of the important challenges and opportunities going forward.

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Year:  2010        PMID: 20829787      PMCID: PMC4100692          DOI: 10.1038/nature09326

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  78 in total

1.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

2.  Bacterial persistence as a phenotypic switch.

Authors:  Nathalie Q Balaban; Jack Merrin; Remy Chait; Lukasz Kowalik; Stanislas Leibler
Journal:  Science       Date:  2004-08-12       Impact factor: 47.728

Review 3.  Forming patterns in development without morphogen gradients: scattered differentiation and sorting out.

Authors:  Robert R Kay; Christopher R L Thompson
Journal:  Cold Spring Harb Perspect Biol       Date:  2009-07-29       Impact factor: 10.005

4.  Phenotypic diversity, population growth, and information in fluctuating environments.

Authors:  Edo Kussell; Stanislas Leibler
Journal:  Science       Date:  2005-08-25       Impact factor: 47.728

5.  The effects of molecular noise and size control on variability in the budding yeast cell cycle.

Authors:  Stefano Di Talia; Jan M Skotheim; James M Bean; Eric D Siggia; Frederick R Cross
Journal:  Nature       Date:  2007-08-23       Impact factor: 49.962

6.  Noise in gene expression determines cell fate in Bacillus subtilis.

Authors:  Hédia Maamar; Arjun Raj; David Dubnau
Journal:  Science       Date:  2007-06-14       Impact factor: 47.728

Review 7.  Nature, nurture, or chance: stochastic gene expression and its consequences.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

8.  Transcriptome-wide noise controls lineage choice in mammalian progenitor cells.

Authors:  Hannah H Chang; Martin Hemberg; Mauricio Barahona; Donald E Ingber; Sui Huang
Journal:  Nature       Date:  2008-05-22       Impact factor: 49.962

9.  Single-RNA counting reveals alternative modes of gene expression in yeast.

Authors:  Daniel Zenklusen; Daniel R Larson; Robert H Singer
Journal:  Nat Struct Mol Biol       Date:  2008-11-16       Impact factor: 15.369

10.  Frequency-modulated nuclear localization bursts coordinate gene regulation.

Authors:  Long Cai; Chiraj K Dalal; Michael B Elowitz
Journal:  Nature       Date:  2008-09-25       Impact factor: 49.962

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  525 in total

1.  Stochastic steady state gain in a gene expression process with mRNA degradation control.

Authors:  Hiroyuki Kuwahara; Russell Schwartz
Journal:  J R Soc Interface       Date:  2012-01-11       Impact factor: 4.118

2.  Building stem-cell genomics in California and beyond.

Authors:  Natalie D Dewitt; Michael P Yaffe; Alan Trounson
Journal:  Nat Biotechnol       Date:  2012-01-09       Impact factor: 54.908

3.  Reconciling molecular regulatory mechanisms with noise patterns of bacterial metabolic promoters in induced and repressed states.

Authors:  Matthew L Ferguson; Dominique Le Coq; Matthieu Jules; Stéphane Aymerich; Ovidiu Radulescu; Nathalie Declerck; Catherine A Royer
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-21       Impact factor: 11.205

4.  Stability and multiattractor dynamics of a toggle switch based on a two-stage model of stochastic gene expression.

Authors:  Michael Strasser; Fabian J Theis; Carsten Marr
Journal:  Biophys J       Date:  2012-01-03       Impact factor: 4.033

5.  A common repressor pool results in indeterminacy of extrinsic noise.

Authors:  Michail Stamatakis; Rhys M Adams; Gábor Balázsi
Journal:  Chaos       Date:  2011-12       Impact factor: 3.642

6.  Identifying sources of variation and the flow of information in biochemical networks.

Authors:  Clive G Bowsher; Peter S Swain
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-23       Impact factor: 11.205

7.  Discreteness-induced concentration inversion in mesoscopic chemical systems.

Authors:  Rajesh Ramaswamy; Nélido González-Segredo; Ivo F Sbalzarini; Ramon Grima
Journal:  Nat Commun       Date:  2012-04-10       Impact factor: 14.919

Review 8.  The origin of diversity: studying the evolution of multi-faceted CD8+ T cell responses.

Authors:  Veit R Buchholz; Patricia Gräf; Dirk H Busch
Journal:  Cell Mol Life Sci       Date:  2012-04-04       Impact factor: 9.261

Review 9.  What history tells us. XXVII. A new life for allostery.

Authors:  Michel Morange
Journal:  J Biosci       Date:  2012-03       Impact factor: 1.826

10.  Locally noisy autonomous agents improve global human coordination in network experiments.

Authors:  Hirokazu Shirado; Nicholas A Christakis
Journal:  Nature       Date:  2017-05-17       Impact factor: 49.962

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