Literature DB >> 19903483

The pedestrian watchmaker: genetic clocks from engineered oscillators.

Natalie A Cookson1, Lev S Tsimring, Jeff Hasty.   

Abstract

The crucial role of time-keeping has required organisms to develop sophisticated regulatory networks to ensure the reliable propagation of periodic behavior. These biological clocks have long been a focus of research; however, a clear understanding of how they maintain oscillations in the face of unpredictable environments and the inherent noise of biological systems remains elusive. Here, we review the current understanding of circadian oscillations using Drosophila melanogaster as a typical example and discuss the utility of an alternative synthetic biology approach to studying these highly intricate systems.

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Year:  2009        PMID: 19903483      PMCID: PMC2921805          DOI: 10.1016/j.febslet.2009.10.089

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  57 in total

Review 1.  Time zones: a comparative genetics of circadian clocks.

Authors:  M W Young; S A Kay
Journal:  Nat Rev Genet       Date:  2001-09       Impact factor: 53.242

2.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

3.  A role for the segment polarity gene shaggy/GSK-3 in the Drosophila circadian clock.

Authors:  S Martinek; S Inonog; A S Manoukian; M W Young
Journal:  Cell       Date:  2001-06-15       Impact factor: 41.582

Review 4.  Reconstruction of genetic circuits.

Authors:  David Sprinzak; Michael B Elowitz
Journal:  Nature       Date:  2005-11-24       Impact factor: 49.962

5.  A microfluidic chemostat for experiments with bacterial and yeast cells.

Authors:  Alex Groisman; Caroline Lobo; HoJung Cho; J Kyle Campbell; Yann S Dufour; Ann M Stevens; Andre Levchenko
Journal:  Nat Methods       Date:  2005-09       Impact factor: 28.547

Review 6.  Transcriptional regulation via the NF-kappaB signaling module.

Authors:  A Hoffmann; G Natoli; G Ghosh
Journal:  Oncogene       Date:  2006-10-30       Impact factor: 9.867

7.  Comparison of classical and autogenous systems of regulation in inducible operons.

Authors:  M A Savageau
Journal:  Nature       Date:  1974-12-13       Impact factor: 49.962

Review 8.  Engineered gene circuits.

Authors:  Jeff Hasty; David McMillen; J J Collins
Journal:  Nature       Date:  2002-11-14       Impact factor: 49.962

9.  Designer gene networks: Towards fundamental cellular control.

Authors:  Jeff Hasty; Farren Isaacs; Milos Dolnik; David McMillen; J. J. Collins
Journal:  Chaos       Date:  2001-03       Impact factor: 3.642

10.  A fast, robust and tunable synthetic gene oscillator.

Authors:  Jesse Stricker; Scott Cookson; Matthew R Bennett; William H Mather; Lev S Tsimring; Jeff Hasty
Journal:  Nature       Date:  2008-10-29       Impact factor: 49.962

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  5 in total

1.  Information-optimal transcriptional response to oscillatory driving.

Authors:  Andrew Mugler; Aleksandra M Walczak; Chris H Wiggins
Journal:  Phys Rev Lett       Date:  2010-07-29       Impact factor: 9.161

Review 2.  Synthetic biology: integrated gene circuits.

Authors:  Nagarajan Nandagopal; Michael B Elowitz
Journal:  Science       Date:  2011-09-02       Impact factor: 47.728

3.  Robustness of circadian clocks to daylight fluctuations: hints from the picoeucaryote Ostreococcus tauri.

Authors:  Quentin Thommen; Benjamin Pfeuty; Pierre-Emmanuel Morant; Florence Corellou; François-Yves Bouget; Marc Lefranc
Journal:  PLoS Comput Biol       Date:  2010-11-11       Impact factor: 4.475

4.  Dynamic reprogramming of chromatin: paradigmatic palimpsests and HES factors.

Authors:  Kurtulus Kok; David N Arnosti
Journal:  Front Genet       Date:  2015-02-10       Impact factor: 4.599

5.  A synchronized quorum of genetic clocks.

Authors:  Tal Danino; Octavio Mondragón-Palomino; Lev Tsimring; Jeff Hasty
Journal:  Nature       Date:  2010-01-21       Impact factor: 49.962

  5 in total

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