Literature DB >> 18065461

Investigations of vibrational coherence in the low-frequency region of ferric heme proteins.

Flaviu Gruia1, Minoru Kubo, Xiong Ye, Paul M Champion.   

Abstract

Femtosecond coherence spectroscopy is applied to a series of ferric heme protein samples. The low-frequency vibrational spectra that are revealed show dominant oscillations near 40 cm(-1). MbCN is taken as a typical example of a histidine-ligated, six-coordinate, ferric heme and a comprehensive spectroscopic analysis is carried out. The results of this analysis reveal a new heme photoproduct species, absorbing near 418 nm, which is consistent with the photolysis of the His(93) axial ligand. The photoproduct undergoes subsequent rebinding/recovery with a time constant of approximately 4 ps. The photoproduct lineshapes are consistent with a photolysis quantum yield of 75-100%, although the observation of a relatively strong six-coordinate heme coherence near 252 cm(-1) (assigned to nu(9) in the MbCN Raman spectrum) suggests that the 75% lower limit is much more likely. The phase and amplitude excitation profiles of the low-frequency mode at 40 cm(-1) suggest that this mode is strongly coupled to the MbCN photoproduct species and it is assigned to the doming mode of the transient penta-coordinated material. The absolute phase of the 40 cm(-1) mode is found to be pi/2 on the red side of 418 nm and it jumps to 3pi/2 as excitation is tuned to the blue side of 418 nm. The absolute phase of the 40 cm(-1) signal is not explained by the standard theory for resonant impulsive stimulated Raman scattering. New mechanisms that give a dominant momentum impulse to the resonant wavepacket, rather than a coordinate displacement, are discussed. The possibilities of heme iron atom recoil after photolysis, as well as ultrafast nonradiative decay, are explored as potential ways to generate the strong momentum impulse needed to understand the phase properties of the 40 cm(-1) mode.

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Year:  2007        PMID: 18065461      PMCID: PMC2257916          DOI: 10.1529/biophysj.107.122119

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  57 in total

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Journal:  Methods Enzymol       Date:  1978       Impact factor: 1.600

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Journal:  Biophys J       Date:  1999-07       Impact factor: 4.033

9.  Photodissociation of heme distal methionine in ferrous cytochrome C revealed by subpicosecond time-resolved resonance Raman spectroscopy.

Authors:  Simona Cianetti; Michel Négrerie; Marten H Vos; Jean-Louis Martin; Sergei G Kruglik
Journal:  J Am Chem Soc       Date:  2004-11-03       Impact factor: 15.419

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Journal:  J Biol Chem       Date:  1990-05-15       Impact factor: 5.157

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  15 in total

1.  Coherence spectroscopy investigations of the low-frequency vibrations of heme: effects of protein-specific perturbations.

Authors:  Flaviu Gruia; Minoru Kubo; Xiong Ye; Dan Ionascu; Changyuan Lu; Robert K Poole; Syun-Ru Yeh; Paul M Champion
Journal:  J Am Chem Soc       Date:  2008-03-20       Impact factor: 15.419

Review 2.  Radiofrequency and microwave interactions between biomolecular systems.

Authors:  Ondřej Kučera; Michal Cifra
Journal:  J Biol Phys       Date:  2015-07-15       Impact factor: 1.365

3.  Investigations of heme distortion, low-frequency vibrational excitations, and electron transfer in cytochrome c.

Authors:  Yuhan Sun; Abdelkrim Benabbas; Weiqiao Zeng; Jesse G Kleingardner; Kara L Bren; Paul M Champion
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-21       Impact factor: 11.205

4.  Spectroscopic identification of reactive porphyrin motions.

Authors:  Alexander Barabanschikov; Alexander Demidov; Minoru Kubo; Paul M Champion; J Timothy Sage; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp
Journal:  J Chem Phys       Date:  2011-07-07       Impact factor: 3.488

5.  An investigation into the feasibility of myoglobin-based single-electron transistors.

Authors:  Debin Li; Peter M Gannett; David Lederman
Journal:  Nanotechnology       Date:  2012-09-12       Impact factor: 3.874

6.  Ultrafast Structural Changes Decomposed from Serial Crystallographic Data.

Authors:  Zhong Ren
Journal:  J Phys Chem Lett       Date:  2019-11-07       Impact factor: 6.475

7.  Investigations of ferric heme cyanide photodissociation in myoglobin and horseradish peroxidase.

Authors:  Weiqiao Zeng; Yuhan Sun; Abdelkrim Benabbas; Paul M Champion
Journal:  J Phys Chem B       Date:  2013-04-03       Impact factor: 2.991

8.  Investigations of the low-frequency spectral density of cytochrome c upon equilibrium unfolding.

Authors:  Yuhan Sun; Venugopal Karunakaran; Paul M Champion
Journal:  J Phys Chem B       Date:  2013-08-07       Impact factor: 2.991

9.  Low-frequency mode activity of heme: femtosecond coherence spectroscopy of iron porphine halides and nitrophorin.

Authors:  Minoru Kubo; Flaviu Gruia; Abdelkrim Benabbas; Alexander Barabanschikov; William R Montfort; Estelle M Maes; Paul M Champion
Journal:  J Am Chem Soc       Date:  2008-07-03       Impact factor: 15.419

10.  Low-frequency dynamics of Caldariomyces fumago chloroperoxidase probed by femtosecond coherence spectroscopy.

Authors:  Flaviu Gruia; Dan Ionascu; Minoru Kubo; Xiong Ye; John Dawson; Robert L Osborne; S G Sligar; Ilia Denisov; Aditi Das; T L Poulos; James Terner; Paul M Champion
Journal:  Biochemistry       Date:  2008-04-12       Impact factor: 3.162

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